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This orthogroup contains 216 genes from 139 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 216 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR21321 | PNAS-3 RELATED | 181 / 216 | 83.8% | 100.0% of 181 | ≥80% support |
| Pfam | PF21266 | RRP4_S1 — RRP4, S1 domain | 175 / 216 | 81.0% | 93.6% of 187 | ≥80% support |
| Pfam | PF15985 | KH_6 — KH domain | 173 / 216 | 80.1% | 92.5% of 187 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 182 / 216 | 84.3% | 100.0% of 182 | ≥80% support |
| GO | GO:0071034 Biological Process | CUT catabolic process | 181 / 216 | 83.8% | 99.5% of 182 | ≥80% support |
| GO | GO:0071051 Biological Process | poly(A)-dependent snoRNA 3'-end processing | 181 / 216 | 83.8% | 99.5% of 182 | ≥80% support |
| GO | GO:0071038 Biological Process | TRAMP-dependent tRNA surveillance pathway | 181 / 216 | 83.8% | 99.5% of 182 | ≥80% support |
| GO | GO:0071035 Biological Process | nuclear polyadenylation-dependent rRNA catabolic process | 181 / 216 | 83.8% | 99.5% of 182 | ≥80% support |
| GO | GO:0000176 Cellular Component | nuclear exosome (RNase complex) | 181 / 216 | 83.8% | 99.5% of 182 | ≥80% support |
| GO | GO:0043928 Biological Process | obsolete exonucleolytic catabolism of deadenylated mRNA | 181 / 216 | 83.8% | 99.5% of 182 | ≥80% support |
| GO | GO:0034475 Biological Process | U4 snRNA 3'-end processing | 181 / 216 | 83.8% | 99.5% of 182 | ≥80% support |
| GO | GO:0034427 Biological Process | obsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 181 / 216 | 83.8% | 99.5% of 182 | ≥80% support |
| GO | GO:0000467 Biological Process | exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 181 / 216 | 83.8% | 99.5% of 182 | ≥80% support |
| GO | GO:0000178 Cellular Component | exosome (RNase complex) | 181 / 216 | 83.8% | 99.5% of 182 | ≥80% support |
| GO | GO:0000177 Cellular Component | cytoplasmic exosome (RNase complex) | 181 / 216 | 83.8% | 99.5% of 182 | ≥80% support |
| KEGG | K03679 | RRP4, EXOSC2 — Messenger RNA biogenesis | 174 / 216 | 80.6% | 100.0% of 174 | ≥80% support |
| Pfam | PF14382 | ECR1_N — Exosome complex exonuclease RRP4 N-terminal region | 169 / 216 | 78.2% | 90.4% of 187 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Actinia mediterranea | ENSQPTP00000009350.1 | none | – | JBrowse | |
| Actinia mediterranea | ENSQPTP00000009358.1 | XP_031568847.1 | exosome complex component RRP4-like [Actinia tenebrosa] | Q2KID0 Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOS | JBrowse |
| Actinia mediterranea | ENSQPTP00000009367.1 | none | – | JBrowse | |
| Actinia mediterranea | ENSQPTP00000050960.1 | none | – | JBrowse | |
| Actinia mediterranea | ENSQPTP00000050967.1 | XP_031568847.1 | exosome complex component RRP4-like [Actinia tenebrosa] | Q2KID0 Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOS | JBrowse |
| Actinia mediterranea | ENSQPTP00000050975.1 | none | – | JBrowse |
