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This orthogroup contains 229 genes from 140 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 229 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13964 | RBP-RELATED | 193 / 229 | 84.3% | 100.0% of 193 | ≥80% support |
| GO | GO:0000976 Molecular Function | transcription cis-regulatory region binding | 193 / 229 | 84.3% | 100.0% of 193 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 193 / 229 | 84.3% | 100.0% of 193 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 193 / 229 | 84.3% | 100.0% of 193 | ≥80% support |
| Pfam | PF01388 | ARID | 168 / 229 | 73.4% | 92.8% of 181 | ≥50% support |
| Pfam | PF11717 | Tudor-knot — RNA binding activity-knot of a chromodomain | 162 / 229 | 70.7% | 89.5% of 181 | ≥50% support |
| Pfam | PF08169 | RBB1NT | 157 / 229 | 68.6% | 86.7% of 181 | ≥50% support |
| GO | GO:0003677 Molecular Function | DNA binding | 171 / 229 | 74.7% | 88.6% of 193 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora muricata | amur_s0108.g4.t1 | XP_029179281.2 | AT-rich interactive domain-containing protein 4A-like [Acropora millepora] | P29374 AT-rich interactive domain-containing protein 4A OS=Homo sap | JBrowse |
| Acropora muricata | amur_s1892.g1.t1 | XP_015751621.1 | PREDICTED: AT-rich interactive domain-containing protein 4A-like isoform X2 [Acropora digitifera] | P42696 RNA-binding protein 34 OS=Homo sapiens OX=9606 GN=RBM34 PE=1 | JBrowse |
