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This orthogroup contains 313 genes from 138 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 313 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR17204 | PRE-MRNA PROCESSING PROTEIN PRP39-RELATED | 272 / 313 | 86.9% | 100.0% of 272 | ≥80% support |
| GO | GO:0000243 Cellular Component | commitment complex | 272 / 313 | 86.9% | 100.0% of 272 | ≥80% support |
| GO | GO:0000395 Biological Process | mRNA 5'-splice site recognition | 272 / 313 | 86.9% | 100.0% of 272 | ≥80% support |
| GO | GO:0005515 Molecular Function | protein binding | 272 / 313 | 86.9% | 100.0% of 272 | ≥80% support |
| GO | GO:0005685 Cellular Component | U1 snRNP | 272 / 313 | 86.9% | 100.0% of 272 | ≥80% support |
| GO | GO:0030627 Molecular Function | pre-mRNA 5'-splice site binding | 272 / 313 | 86.9% | 100.0% of 272 | ≥80% support |
| GO | GO:0071004 Cellular Component | U2-type prespliceosome | 272 / 313 | 86.9% | 100.0% of 272 | ≥80% support |
| GO | GO:0006396 Biological Process | RNA processing | 251 / 313 | 80.2% | 92.3% of 272 | ≥80% support |
| KEGG | K13217 | PRPF39, PRP39 — Spliceosome | 171 / 313 | 54.6% | 100.0% of 171 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora palmata | XP_074632345.1 | XP_029203077.2 | pre-mRNA-processing factor 39-like isoform X1 [Acropora millepora] | Q86UA1 Pre-mRNA-processing factor 39 OS=Homo sapiens OX=9606 GN=PRP | JBrowse |
| Acropora palmata | XP_074632346.1 | XP_029203078.2 | pre-mRNA-processing factor 39-like isoform X2 [Acropora millepora] | Q86UA1 Pre-mRNA-processing factor 39 OS=Homo sapiens OX=9606 GN=PRP | JBrowse |
| Acropora palmata | XP_074632347.1 | XP_029203078.2 | pre-mRNA-processing factor 39-like isoform X2 [Acropora millepora] | Q86UA1 Pre-mRNA-processing factor 39 OS=Homo sapiens OX=9606 GN=PRP | JBrowse |
| Acropora palmata | XP_074632348.1 | XP_029203078.2 | pre-mRNA-processing factor 39-like isoform X2 [Acropora millepora] | Q86UA1 Pre-mRNA-processing factor 39 OS=Homo sapiens OX=9606 GN=PRP | JBrowse |
| Acropora palmata | XP_074632349.1 | XP_029203078.2 | pre-mRNA-processing factor 39-like isoform X2 [Acropora millepora] | Q86UA1 Pre-mRNA-processing factor 39 OS=Homo sapiens OX=9606 GN=PRP | JBrowse |
