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This orthogroup contains 303 genes from 142 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 303 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR20856 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 | 256 / 303 | 84.5% | 100.0% of 256 | ≥80% support |
| GO | GO:0003899 Molecular Function | DNA-directed 5'-3' RNA polymerase activity | 259 / 303 | 85.5% | 100.0% of 259 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 258 / 303 | 85.2% | 99.6% of 259 | ≥80% support |
| GO | GO:0006351 Biological Process | DNA-templated transcription | 258 / 303 | 85.2% | 99.6% of 259 | ≥80% support |
| GO | GO:0001054 Molecular Function | RNA polymerase I activity | 256 / 303 | 84.5% | 98.8% of 259 | ≥80% support |
| GO | GO:0005736 Cellular Component | RNA polymerase I complex | 256 / 303 | 84.5% | 98.8% of 259 | ≥80% support |
| GO | GO:0032549 Molecular Function | ribonucleoside binding | 256 / 303 | 84.5% | 98.8% of 259 | ≥80% support |
| Pfam | PF00562 | RNA_pol_Rpb2_6 — RNA polymerase Rpb2, domain 6 | 217 / 303 | 71.6% | 84.8% of 256 | ≥50% support |
| Pfam | PF04560 | RNA_pol_Rpb2_7 — RNA polymerase Rpb2, domain 7 | 188 / 303 | 62.1% | 73.4% of 256 | ≥50% support |
| Pfam | PF04565 | RNA_pol_Rpb2_3 — RNA polymerase Rpb2, domain 3 | 180 / 303 | 59.4% | 70.3% of 256 | ≥50% support |
| Pfam | PF06883 | RNA_pol_Rpa2_4 — RNA polymerase I, Rpa2 specific domain | 178 / 303 | 58.8% | 69.5% of 256 | ≥50% support |
| Pfam | PF04563 | RNA_pol_Rpb2_1 — RNA polymerase beta subunit | 169 / 303 | 55.8% | 66.0% of 256 | ≥50% support |
| Pfam | PF04561 | RNA_pol_Rpb2_2 — RNA polymerase Rpb2, domain 2 | 160 / 303 | 52.8% | 62.5% of 256 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 180 / 303 | 59.4% | 69.5% of 259 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora palmata | XP_074622886.1 | XP_029207367.2 | DNA-directed RNA polymerase I subunit RPA2-like [Acropora millepora] | B8JKD7 DNA-directed RNA polymerase I subunit RPA2 OS=Danio rerio OX | JBrowse |
