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This orthogroup contains 289 genes from 137 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 289 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR23189 | RNA RECOGNITION MOTIF-CONTAINING | 233 / 289 | 80.6% | 94.7% of 246 | ≥80% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 249 / 289 | 86.2% | 98.8% of 252 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 253 / 289 | 87.5% | 100.0% of 253 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 253 / 289 | 87.5% | 100.0% of 253 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 242 / 289 | 83.7% | 95.7% of 253 | ≥80% support |
| Pfam | PF08075 | NOPS | 231 / 289 | 79.9% | 91.7% of 252 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora palmata | XP_074612764.1 | XP_015777941.1 | PREDICTED: non-POU domain-containing octamer-binding protein-like [Acropora digitifera] | Q5ZK88 Paraspeckle component 1 OS=Gallus gallus OX=9031 GN=PSPC1 PE | JBrowse |
| Acropora palmata | XP_074625193.1 | XP_015777941.1 | PREDICTED: non-POU domain-containing octamer-binding protein-like [Acropora digitifera] | Q5ZK88 Paraspeckle component 1 OS=Gallus gallus OX=9031 GN=PSPC1 PE | JBrowse |
| Acropora palmata | XP_074625194.1 | XP_015777941.1 | PREDICTED: non-POU domain-containing octamer-binding protein-like [Acropora digitifera] | Q5ZK88 Paraspeckle component 1 OS=Gallus gallus OX=9031 GN=PSPC1 PE | JBrowse |
| Acropora palmata | XP_074625195.1 | XP_029208843.2 | paraspeckle component 1-like isoform X2 [Acropora millepora] | Q5ZK88 Paraspeckle component 1 OS=Gallus gallus OX=9031 GN=PSPC1 PE | JBrowse |
