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This orthogroup contains 272 genes from 145 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 272 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11274 | RAD25/XP-B DNA REPAIR HELICASE | 235 / 272 | 86.4% | 99.6% of 236 | ≥80% support |
| GO | GO:0000112 Cellular Component | nucleotide-excision repair factor 3 complex | 234 / 272 | 86.0% | 99.2% of 236 | ≥80% support |
| GO | GO:0005675 Cellular Component | transcription factor TFIIH holo complex | 234 / 272 | 86.0% | 99.2% of 236 | ≥80% support |
| GO | GO:0006367 Biological Process | transcription initiation at RNA polymerase II promoter | 234 / 272 | 86.0% | 99.2% of 236 | ≥80% support |
| GO | GO:0043138 Molecular Function | 3'-5' DNA helicase activity | 234 / 272 | 86.0% | 99.2% of 236 | ≥80% support |
| GO | GO:0097550 Cellular Component | transcription preinitiation complex | 234 / 272 | 86.0% | 99.2% of 236 | ≥80% support |
| Pfam | PF16203 | ERCC3_RAD25_C — ERCC3/RAD25/XPB C-terminal helicase | 213 / 272 | 78.3% | 90.6% of 235 | ≥50% support |
| Pfam | PF04851 | ResIII — Type III restriction enzyme, res subunit | 196 / 272 | 72.1% | 83.4% of 235 | ≥50% support |
| Pfam | PF13625 | Helicase_C_3 — Helicase conserved C-terminal domain | 194 / 272 | 71.3% | 82.6% of 235 | ≥50% support |
| GO | GO:0003678 Molecular Function | DNA helicase activity | 212 / 272 | 77.9% | 89.8% of 236 | ≥50% support |
| GO | GO:0006289 Biological Process | nucleotide-excision repair | 212 / 272 | 77.9% | 89.8% of 236 | ≥50% support |
| GO | GO:0005524 Molecular Function | ATP binding | 198 / 272 | 72.8% | 83.9% of 236 | ≥50% support |
| GO | GO:0003677 Molecular Function | DNA binding | 197 / 272 | 72.4% | 83.5% of 236 | ≥50% support |
| GO | GO:0016787 Molecular Function | hydrolase activity | 196 / 272 | 72.1% | 83.1% of 236 | ≥50% support |
| KEGG | K10843 | ERCC3, XPB — DNA repair and recombination proteins | 176 / 272 | 64.7% | 97.8% of 180 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora palmata | XP_074623971.1 | XP_029190535.2 | general transcription and DNA repair factor IIH helicase subunit XPB-like [Acropora millepora] | Q1RMT1 General transcription and DNA repair factor IIH helicase/tra | JBrowse |
| Acropora palmata | XP_074623972.1 | XP_029190535.2 | general transcription and DNA repair factor IIH helicase subunit XPB-like [Acropora millepora] | Q7ZVV1 General transcription and DNA repair factor IIH helicase/tra | JBrowse |
