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This orthogroup contains 2,803 genes from 145 species (2,804 sequences — 1 extra sequences share a gene identifier with another member, so they are not counted twice). The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 2,803 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00028 | Cadherin | 2322 / 2,803 | 82.8% | 97.6% of 2,380 | ≥80% support |
| GO | GO:0005509 Molecular Function | calcium ion binding | 2396 / 2,803 | 85.5% | 98.8% of 2,426 | ≥80% support |
| GO | GO:0016020 Cellular Component | membrane | 2369 / 2,803 | 84.5% | 97.7% of 2,426 | ≥80% support |
| GO | GO:0007156 Biological Process | homophilic cell adhesion via plasma membrane adhesion molecules | 2365 / 2,803 | 84.4% | 97.5% of 2,426 | ≥80% support |
| GO | GO:0007155 Biological Process | cell adhesion | 2247 / 2,803 | 80.2% | 92.6% of 2,426 | ≥80% support |
| GO | GO:0005886 Cellular Component | plasma membrane | 2228 / 2,803 | 79.5% | 91.8% of 2,426 | ≥50% support |
| GO | GO:0098609 Biological Process | cell-cell adhesion | 1660 / 2,803 | 59.2% | 68.4% of 2,426 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astrangia poculata | evm.model.Ap10.514 | CAH3179920.1 | unnamed protein product [Porites lobata] | Q2PZL6 Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV | JBrowse |
| Astrangia poculata | evm.model.Ap10.515 | KAJ7379358.1 | hypothetical protein OS493_016592 [Desmophyllum pertusum] | Q2PZL6 Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV | JBrowse |
| Astrangia poculata | evm.model.Ap10.640 | XP_020616832.1 | protocadherin Fat 4-like [Orbicella faveolata] | Q2PZL6 Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV | JBrowse |
| Astrangia poculata | evm.model.Ap4.5929 | XP_027035535.1 | protocadherin Fat 4-like [Pocillopora damicornis] | Q6V0I7 Protocadherin Fat 4 OS=Homo sapiens OX=9606 GN=FAT4 PE=1 SV= | JBrowse |
| Astrangia poculata | evm.model.Ap4.5932 | XP_022809062.1 | protocadherin Fat 4-like isoform X2 [Stylophora pistillata] | Q08DJ5 Cadherin-18 OS=Bos taurus OX=9913 GN=CDH18 PE=2 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap4.600 | KAJ7381101.1 | hypothetical protein OS493_004699 [Desmophyllum pertusum] | Q9BYE9 Cadherin-related family member 2 OS=Homo sapiens OX=9606 GN= | JBrowse |
| Astrangia poculata | evm.model.Ap4.601 | CAH3117639.1 | unnamed protein product [Pocillopora meandrina] | P58365 Cadherin-23 OS=Rattus norvegicus OX=10116 GN=Cdh23 PE=2 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap4.602 | KAJ7381100.1 | Protocadherin Fat 4 [Desmophyllum pertusum] | Q2PZL6 Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV | JBrowse |
| Astrangia poculata | evm.model.Ap5.2394 | XP_020604654.1 | protocadherin Fat 4-like [Orbicella faveolata] | E9PVD3 Protocadherin-16 OS=Mus musculus OX=10090 GN=Dchs1 PE=1 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap5.2818 | XP_020604517.1 | LOW QUALITY PROTEIN: protocadherin Fat 4-like [Orbicella faveolata] | Q2PZL6 Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV | JBrowse |
| Astrangia poculata | evm.model.Ap5.2939 | XP_020608283.1 | protocadherin Fat 1-like [Orbicella faveolata] | Q14517 Protocadherin Fat 1 OS=Homo sapiens OX=9606 GN=FAT1 PE=1 SV= | JBrowse |
| Astrangia poculata | evm.model.Ap7.1610 | CAH3147669.1 | unnamed protein product [Porites evermanni] | P33450 Cadherin-related tumor suppressor OS=Drosophila melanogaster | JBrowse |
| Astrangia poculata | evm.model.Ap7.1610.1.5f15e900 | CAH3147669.1 | unnamed protein product [Porites evermanni] | P33450 Cadherin-related tumor suppressor OS=Drosophila melanogaster | JBrowse |
| Astrangia poculata | evm.model.Ap9.2251 | XP_020625379.1 | cadherin-23-like [Orbicella faveolata] | Q2PZL6 Protocadherin Fat 4 OS=Mus musculus OX=10090 GN=Fat4 PE=1 SV | JBrowse |
