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Support counts the member genes carrying the term. % of genes is that count over all 1,962 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR18934 | ATP-DEPENDENT RNA HELICASE | 1572 / 1,962 | 80.1% | 96.8% of 1,624 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 1607 / 1,962 | 81.9% | 98.3% of 1,635 | ≥80% support |
| GO | GO:0004386 Molecular Function | helicase activity | 1572 / 1,962 | 80.1% | 96.2% of 1,635 | ≥80% support |
| GO | GO:0005622 Cellular Component | intracellular anatomical structure | 1572 / 1,962 | 80.1% | 96.2% of 1,635 | ≥80% support |
| Pfam | PF00271 | Helicase_C — Helicase conserved C-terminal domain | 1380 / 1,962 | 70.3% | 86.1% of 1,603 | ≥50% support |
| Pfam | PF07717 | OB_NTP_bind — Oligonucleotide/oligosaccharide-binding (OB)-fold | 1335 / 1,962 | 68.0% | 83.3% of 1,603 | ≥50% support |
| Pfam | PF21010 | HA2_C — Helicase associated domain (HA2), ratchet-like | 1294 / 1,962 | 66.0% | 80.7% of 1,603 | ≥50% support |
| Pfam | PF04408 | HA2_N — Helicase associated domain (HA2), winged-helix | 1190 / 1,962 | 60.7% | 74.2% of 1,603 | ≥50% support |
| Pfam | PF00270 | DEAD | 1176 / 1,962 | 59.9% | 73.4% of 1,603 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 1237 / 1,962 | 63.1% | 75.7% of 1,635 | ≥50% support |
| GO | GO:0005524 Molecular Function | ATP binding | 1195 / 1,962 | 60.9% | 73.1% of 1,635 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astrangia poculata | evm.model.Ap12.1168 | XP_020627950.1 | ATP-dependent RNA helicase DEAH12, chloroplastic-like isoform X1 [Orbicella faveolata] | F4KGU4 ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidop | JBrowse |
| Astrangia poculata | evm.model.Ap12.138 | XP_022800289.1 | probable ATP-dependent RNA helicase DHX40 isoform X1 [Stylophora pistillata] | Q6PE54 Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus OX | JBrowse |
| Astrangia poculata | evm.model.Ap2.80 | XP_020612698.1 | putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 [Orbicella faveolata] | O43143 ATP-dependent RNA helicase DHX15 OS=Homo sapiens OX=9606 GN= | JBrowse |
| Astrangia poculata | evm.model.Ap4.5096 | CAH3031698.1 | unnamed protein product, partial [Pocillopora meandrina] | F4KGU4 ATP-dependent RNA helicase DEAH12, chloroplastic OS=Arabidop | JBrowse |
| Astrangia poculata | evm.model.Ap4.5286 | XP_020600778.1 | pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Orbicella faveolata] | Q17R09 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS | JBrowse |
| Astrangia poculata | evm.model.Ap4.5661 | XP_020622075.1 | putative ATP-dependent RNA helicase DHX33 [Orbicella faveolata] | Q80VY9 ATP-dependent RNA helicase DHX33 OS=Mus musculus OX=10090 GN | JBrowse |
| Astrangia poculata | evm.model.Ap4.5777 | XP_020622812.1 | putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Orbicella faveolata] | O60231 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS | JBrowse |
| Astrangia poculata | evm.model.Ap7.1549 | XP_020621172.1 | ATP-dependent RNA helicase DHX8-like [Orbicella faveolata] | Q14562 ATP-dependent RNA helicase DHX8 OS=Homo sapiens OX=9606 GN=D | JBrowse |
| Astrangia poculata | evm.model.Ap9.108 | XP_020612651.1 | probable ATP-dependent RNA helicase DHX35 [Orbicella faveolata] | Q9H5Z1 Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens OX | JBrowse |
