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This orthogroup contains 1,209 genes from 125 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 1,209 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | VWA — von Willebrand factor type A domain | 1100 / 1,209 | 91.0% | 99.7% of 1,103 | ≥80% support |
| PANTHER | PTHR24020 | COLLAGEN ALPHA | 912 / 1,209 | 75.4% | 83.8% of 1,089 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astrangia poculata | evm.model.Ap10.695 | XP_020621370.1 | neurogenic locus notch homolog protein 1-like [Orbicella faveolata] | P32018 Collagen alpha-1(XIV) chain OS=Gallus gallus OX=9031 GN=COL1 | JBrowse |
| Astrangia poculata | evm.model.Ap14.397 | XP_020631487.1 | uncharacterized protein LOC110068452 [Orbicella faveolata] | Q8VHI5 Vitrin OS=Mus musculus OX=10090 GN=Vit PE=1 SV=2 | JBrowse |
| Astrangia poculata | evm.model.Ap2.1671 | XP_020606890.1 | cartilage matrix protein-like [Orbicella faveolata] | Q99715 Collagen alpha-1(XII) chain OS=Homo sapiens OX=9606 GN=COL12 | JBrowse |
| Astrangia poculata | evm.model.Ap2.1671.1.5f15e028 | XP_020606890.1 | cartilage matrix protein-like [Orbicella faveolata] | Q99715 Collagen alpha-1(XII) chain OS=Homo sapiens OX=9606 GN=COL12 | JBrowse |
| Astrangia poculata | evm.model.Ap3.137 | CAH3154629.1 | unnamed protein product [Porites evermanni] | A2AX52 Collagen alpha-4(VI) chain OS=Mus musculus OX=10090 GN=Col6a | JBrowse |
| Astrangia poculata | evm.model.Ap3.581 | CAH3120470.1 | unnamed protein product, partial [Porites lobata] | P32018 Collagen alpha-1(XIV) chain OS=Gallus gallus OX=9031 GN=COL1 | JBrowse |
| Astrangia poculata | evm.model.Ap6.2819 | XP_020601199.1 | collagen alpha-1(XXVIII) chain-like [Orbicella faveolata] | Q05707 Collagen alpha-1(XIV) chain OS=Homo sapiens OX=9606 GN=COL14 | JBrowse |
| Astrangia poculata | evm.model.Ap6.2823 | CAH3120949.1 | unnamed protein product [Pocillopora meandrina] | P12111 Collagen alpha-3(VI) chain OS=Homo sapiens OX=9606 GN=COL6A3 | JBrowse |
| Astrangia poculata | evm.model.Ap6.2824 | XP_027056235.1 | von Willebrand factor A domain-containing protein 2-like [Pocillopora damicornis] | Q99715 Collagen alpha-1(XII) chain OS=Homo sapiens OX=9606 GN=COL12 | JBrowse |
| Astrangia poculata | evm.model.Ap6.2825 | CAH3120949.1 | unnamed protein product [Pocillopora meandrina] | P12111 Collagen alpha-3(VI) chain OS=Homo sapiens OX=9606 GN=COL6A3 | JBrowse |
