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This orthogroup contains 1,043 genes from 102 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 1,043 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR24240 | OPSIN | 951 / 1,043 | 91.2% | 99.3% of 958 | ≥80% support |
| Pfam | PF00001 | 7tm_1 — 7 transmembrane receptor (rhodopsin family) | 923 / 1,043 | 88.5% | 100.0% of 923 | ≥80% support |
| GO | GO:0016020 Cellular Component | membrane | 961 / 1,043 | 92.1% | 100.0% of 961 | ≥80% support |
| GO | GO:0007186 Biological Process | G protein-coupled receptor signaling pathway | 958 / 1,043 | 91.9% | 99.7% of 961 | ≥80% support |
| GO | GO:0005887 Cellular Component | plasma membrane | 951 / 1,043 | 91.2% | 99.0% of 961 | ≥80% support |
| GO | GO:0007602 Biological Process | phototransduction | 951 / 1,043 | 91.2% | 99.0% of 961 | ≥80% support |
| GO | GO:0008020 Molecular Function | G protein-coupled photoreceptor activity | 951 / 1,043 | 91.2% | 99.0% of 961 | ≥80% support |
| GO | GO:0071482 Biological Process | cellular response to light stimulus | 951 / 1,043 | 91.2% | 99.0% of 961 | ≥80% support |
| GO | GO:0004930 Molecular Function | G protein-coupled receptor activity | 940 / 1,043 | 90.1% | 97.8% of 961 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astrangia poculata | evm.model.Ap3.1079 | XP_022780507.1 | melanopsin-like [Stylophora pistillata] | Q4U4D2 Melanopsin OS=Podarcis siculus OX=65484 GN=OPN4 PE=2 SV=2 | JBrowse |
| Astrangia poculata | evm.model.Ap3.1080 | XP_020601748.1 | visual pigment-like receptor peropsin [Orbicella faveolata] | O57422 Melanopsin-B OS=Xenopus laevis OX=8355 GN=opn4b PE=2 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap3.1704 | KAJ7375084.1 | Melanopsin [Desmophyllum pertusum] | Q6XL69 Melanopsin OS=Rutilus rutilus OX=48668 GN=opn4 PE=2 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap3.2301 | XP_020631765.1 | rhodopsin-like [Orbicella faveolata] | O42490 Pineal opsin OS=Petromyzon marinus OX=7757 PE=1 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap4.6865 | XP_020619724.1 | rhodopsin, GQ-coupled-like [Orbicella faveolata] | Q4U4D2 Melanopsin OS=Podarcis siculus OX=65484 GN=OPN4 PE=2 SV=2 | JBrowse |
| Astrangia poculata | evm.model.Ap4.6866 | XP_020619724.1 | rhodopsin, GQ-coupled-like [Orbicella faveolata] | P51475 Pinopsin OS=Gallus gallus OX=9031 PE=1 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap4.6887 | XP_020619724.1 | rhodopsin, GQ-coupled-like [Orbicella faveolata] | P51475 Pinopsin OS=Gallus gallus OX=9031 PE=1 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap4.6910 | XP_020619730.1 | visual pigment-like receptor peropsin [Orbicella faveolata] | O57422 Melanopsin-B OS=Xenopus laevis OX=8355 GN=opn4b PE=2 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap4.6919 | XP_020619653.1 | melanopsin-like [Orbicella faveolata] | P51476 Pinopsin OS=Columba livia OX=8932 PE=1 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap4.6920 | XP_020619653.1 | melanopsin-like [Orbicella faveolata] | – | JBrowse |
| Astrangia poculata | evm.model.Ap4.6922 | CAH3031854.1 | unnamed protein product [Pocillopora meandrina] | Q5XXP2 Melanopsin OS=Phodopus sungorus OX=10044 GN=OPN4 PE=2 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap8.2774 | KAJ7374324.1 | hypothetical protein OS493_007412 [Desmophyllum pertusum] | Q804X9 Melanopsin-A OS=Gadus morhua OX=8049 GN=opn4a PE=2 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap8.2775 | none | – | JBrowse | |
| Astrangia poculata | evm.model.Ap9.2134 | XP_027038406.1 | opsin-VA-like [Pocillopora damicornis] | P87365 Blue-sensitive opsin OS=Oryzias latipes OX=8090 PE=2 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap9.2136 | XP_020614449.1 | melanopsin-like [Orbicella faveolata] | Q8AYM7 Green-sensitive opsin-3 OS=Danio rerio OX=7955 GN=opn1mw3 PE | JBrowse |
| Astrangia poculata | evm.model.Ap9.2160 | XP_027038406.1 | opsin-VA-like [Pocillopora damicornis] | P87365 Blue-sensitive opsin OS=Oryzias latipes OX=8090 PE=2 SV=1 | JBrowse |
| Astrangia poculata | evm.model.Ap9.2162 | XP_027043971.1 | rhodopsin-like [Pocillopora damicornis] | P32310 Blue-sensitive opsin OS=Carassius auratus OX=7957 PE=1 SV=1 | JBrowse |
