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This orthogroup contains 229 genes from 144 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 229 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12786 | SPLICING FACTOR SF3A-RELATED | 200 / 229 | 87.3% | 100.0% of 200 | ≥80% support |
| Pfam | PF16837 | SF3A3 | 186 / 229 | 81.2% | 89.4% of 208 | ≥80% support |
| Pfam | PF13297 | SDE2_2C — Replication stress response SDE2 C-terminal | 185 / 229 | 80.8% | 88.9% of 208 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 199 / 229 | 86.9% | 98.5% of 202 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 199 / 229 | 86.9% | 98.5% of 202 | ≥80% support |
| GO | GO:0005681 Cellular Component | spliceosomal complex | 199 / 229 | 86.9% | 98.5% of 202 | ≥80% support |
| Pfam | PF11931 | SF3a60_Prp9_C — SF3a60/Prp9 C-terminal | 178 / 229 | 77.7% | 85.6% of 208 | ≥50% support |
| Pfam | PF12108 | SF3a60_bindingd — Splicing factor SF3a60 binding domain | 178 / 229 | 77.7% | 85.6% of 208 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 168 / 229 | 73.4% | 83.2% of 202 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 163 / 229 | 71.2% | 80.7% of 202 | ≥50% support |
| GO | GO:0008270 Molecular Function | zinc ion binding | 163 / 229 | 71.2% | 80.7% of 202 | ≥50% support |
| KEGG | K12827 | SF3A3, SAP61, PRP9 — Spliceosome | 174 / 229 | 76.0% | 100.0% of 174 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astrangia poculata | evm.model.Ap6.3117 | CAH3120600.1 | unnamed protein product [Pocillopora meandrina] | Q9D554 Splicing factor 3A subunit 3 OS=Mus musculus OX=10090 GN=Sf3 | JBrowse |
| Astrangia poculata | evm.model.Ap6.3117.1.5f15e29e | XP_022799670.1 | splicing factor 3A subunit 3-like [Stylophora pistillata] | Q9D554 Splicing factor 3A subunit 3 OS=Mus musculus OX=10090 GN=Sf3 | JBrowse |
