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This orthogroup contains 228 genes from 143 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 228 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13000 | NUCLEOPORIN P54 | 184 / 228 | 80.7% | 100.0% of 184 | ≥80% support |
| GO | GO:0005643 Cellular Component | nuclear pore | 184 / 228 | 80.7% | 100.0% of 184 | ≥80% support |
| GO | GO:0006607 Biological Process | NLS-bearing protein import into nucleus | 184 / 228 | 80.7% | 100.0% of 184 | ≥80% support |
| GO | GO:0006999 Biological Process | nuclear pore organization | 184 / 228 | 80.7% | 100.0% of 184 | ≥80% support |
| GO | GO:0017056 Molecular Function | structural constituent of nuclear pore | 184 / 228 | 80.7% | 100.0% of 184 | ≥80% support |
| GO | GO:0036228 Biological Process | protein localization to nuclear inner membrane | 184 / 228 | 80.7% | 100.0% of 184 | ≥80% support |
| GO | GO:0044613 Cellular Component | nuclear pore central transport channel | 184 / 228 | 80.7% | 100.0% of 184 | ≥80% support |
| Pfam | PF13874 | Nup54 — Nucleoporin complex subunit 54 | 169 / 228 | 74.1% | 98.3% of 172 | ≥50% support |
| Pfam | PF18437 | Nup54_C — Nup54 C-terminal interacting domain | 158 / 228 | 69.3% | 91.9% of 172 | ≥50% support |
| KEGG | K14308 | NUP54, NUP57 — Messenger RNA biogenesis | 145 / 228 | 63.6% | 98.0% of 148 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astrangia poculata | evm.model.Ap5.1205 | XP_020616032.1 | nuclear pore complex protein Nup54-like [Orbicella faveolata] | Q8BTS4 Nuclear pore complex protein Nup54 OS=Mus musculus OX=10090 | JBrowse |
