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This orthogroup contains 198 genes from 140 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 198 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12262 | UNCHARACTERIZED | 170 / 198 | 85.9% | 100.0% of 170 | ≥80% support |
| Pfam | PF04078 | Rcd1 | 170 / 198 | 85.9% | 100.0% of 170 | ≥80% support |
| GO | GO:0006402 Biological Process | mRNA catabolic process | 171 / 198 | 86.4% | 100.0% of 171 | ≥80% support |
| GO | GO:0030014 Cellular Component | CCR4-NOT complex | 171 / 198 | 86.4% | 100.0% of 171 | ≥80% support |
| GO | GO:0000932 Cellular Component | P-body | 170 / 198 | 85.9% | 99.4% of 171 | ≥80% support |
| GO | GO:0017148 Biological Process | negative regulation of translation | 170 / 198 | 85.9% | 99.4% of 171 | ≥80% support |
| GO | GO:0030015 Cellular Component | CCR4-NOT core complex | 170 / 198 | 85.9% | 99.4% of 171 | ≥80% support |
| KEGG | K12606 | RCD1, CNOT9, CAF40 — Messenger RNA biogenesis | 160 / 198 | 80.8% | 100.0% of 160 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astrangia poculata | evm.model.Ap13.1140 | XP_020619444.1 | cell differentiation protein RCD1 homolog [Orbicella faveolata] | Q6IP65 CCR4-NOT transcription complex subunit 9 OS=Xenopus laevis O | JBrowse |
| Astrangia poculata | evm.model.Ap13.1140.1.5f15de5b | XP_020619444.1 | cell differentiation protein RCD1 homolog [Orbicella faveolata] | Q6IP65 CCR4-NOT transcription complex subunit 9 OS=Xenopus laevis O | JBrowse |
