← Back to the gene family browser
Support counts the member genes carrying the term. % of genes is that count over all 30 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF01391 | Collagen | 28 / 30 | 93.3% | 100.0% of 28 | ≥80% support |
| GO | GO:0031012 Cellular Component | extracellular matrix | 24 / 30 | 80.0% | 96.0% of 25 | ≥80% support |
| PANTHER | PTHR24023 | COLLAGEN ALPHA | 23 / 30 | 76.7% | 82.1% of 28 | ≥50% support |
| GO | GO:0005615 Cellular Component | extracellular space | 23 / 30 | 76.7% | 92.0% of 25 | ≥50% support |
| GO | GO:0030198 Biological Process | extracellular matrix organization | 23 / 30 | 76.7% | 92.0% of 25 | ≥50% support |
| GO | GO:0030020 Molecular Function | extracellular matrix structural constituent conferring tensile strength | 22 / 30 | 73.3% | 88.0% of 25 | ≥50% support |
| GO | GO:0062023 Cellular Component | collagen-containing extracellular matrix | 22 / 30 | 73.3% | 88.0% of 25 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Astrangia poculata | evm.model.Ap1.207 | none | – | JBrowse | |
| Astrangia poculata | evm.model.Ap14.1376 | none | – | JBrowse | |
| Astrangia poculata | evm.model.Ap4.5007 | PFX29338.1 | hypothetical protein AWC38_SpisGene5881 [Stylophora pistillata] | – | JBrowse |
| Astrangia poculata | evm.model.Ap7.2143 | XP_020620944.1 | N-chimaerin-like [Orbicella faveolata] | P52757 Beta-chimaerin OS=Homo sapiens OX=9606 GN=CHN2 PE=1 SV=2 | JBrowse |
