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This orthogroup contains 2,252 genes from 149 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 2,252 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 1928 / 2,252 | 85.6% | 97.9% of 1,970 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 1977 / 2,252 | 87.8% | 99.8% of 1,982 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 1923 / 2,252 | 85.4% | 97.0% of 1,982 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 1851 / 2,252 | 82.2% | 93.4% of 1,982 | ≥80% support |
| PANTHER | PTHR24329 | HOMEOBOX PROTEIN ARISTALESS | 1394 / 2,252 | 61.9% | 71.5% of 1,951 | ≥50% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 1765 / 2,252 | 78.4% | 89.1% of 1,982 | ≥50% support |
| GO | GO:0000977 Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 1404 / 2,252 | 62.3% | 70.8% of 1,982 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora selago | asel_s0014.g45.t1 | XP_029193171.1 | retinal homeobox protein Rx1-like [Acropora millepora] | O42567 Retinal homeobox protein Rx-B OS=Xenopus laevis OX=8355 GN=r | JBrowse |
| Acropora selago | asel_s0046.g13.t1 | XP_015758203.1 | PREDICTED: aristaless-related homeobox protein-like [Acropora digitifera] | O95076 Homeobox protein aristaless-like 3 OS=Homo sapiens OX=9606 G | JBrowse |
| Acropora selago | asel_s0051.g63.t1 | XP_015780494.1 | PREDICTED: aristaless-related homeobox protein-like isoform X1 [Acropora digitifera] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Acropora selago | asel_s0116.g27.t1 | XP_015763399.1 | PREDICTED: retinal homeobox protein Rx1-like [Acropora digitifera] | P29506 Homeobox protein unc-4 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Acropora selago | asel_s0116.g28.t1 | XP_029212991.1 | homeobox protein OTX2-A-like [Acropora millepora] | A6NJT0 Homeobox protein unc-4 homolog OS=Homo sapiens OX=9606 GN=UN | JBrowse |
| Acropora selago | asel_s0178.g43.t1 | XP_029207414.2 | visual system homeobox 2-like isoform X2 [Acropora millepora] | Q61412 Visual system homeobox 2 OS=Mus musculus OX=10090 GN=Vsx2 PE | JBrowse |
| Acropora selago | asel_s0224.g10.t1 | XP_029183164.2 | aristaless-related homeobox protein-like [Acropora millepora] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Acropora selago | asel_s0274.g23.t1 | XP_029197801.1 | paired mesoderm homeobox protein 2-like [Acropora millepora] | Q90963 Paired mesoderm homeobox protein 2 (Fragment) OS=Gallus gall | JBrowse |
| Acropora selago | asel_s0296.g2.t1 | XP_029181173.1 | paired mesoderm homeobox protein 1-like [Acropora millepora] | O35750 Short stature homeobox protein 2 (Fragment) OS=Rattus norveg | JBrowse |
| Acropora selago | asel_s0326.g9.t1 | XP_029190295.2 | homeobox protein goosecoid isoform X1 [Acropora millepora] | P54366 Homeobox protein goosecoid OS=Drosophila melanogaster OX=722 | JBrowse |
| Acropora selago | asel_s0326.g9.t2 | XP_015753680.1 | PREDICTED: homeobox protein goosecoid-like [Acropora digitifera] | P54366 Homeobox protein goosecoid OS=Drosophila melanogaster OX=722 | JBrowse |
| Acropora selago | asel_s0342.g27.t1 | XP_029189815.2 | retina and anterior neural fold homeobox protein 2-like isoform X2 [Acropora millepora] | Q3LU38 Homeobox protein prophet of Pit-1 OS=Alouatta belzebul OX=30 | JBrowse |
