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This orthogroup contains 226 genes from 142 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 226 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12311 | ACTIVATOR OF BASAL TRANSCRIPTION 1 | 202 / 226 | 89.4% | 99.5% of 203 | ≥80% support |
| GO | GO:0000447 Biological Process | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 202 / 226 | 89.4% | 99.5% of 203 | ≥80% support |
| GO | GO:0000472 Biological Process | endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 202 / 226 | 89.4% | 99.5% of 203 | ≥80% support |
| GO | GO:0000480 Biological Process | endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 202 / 226 | 89.4% | 99.5% of 203 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 202 / 226 | 89.4% | 99.5% of 203 | ≥80% support |
| GO | GO:0005730 Cellular Component | nucleolus | 202 / 226 | 89.4% | 99.5% of 203 | ≥80% support |
| GO | GO:0034462 Biological Process | small-subunit processome assembly | 202 / 226 | 89.4% | 99.5% of 203 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 187 / 226 | 82.7% | 92.1% of 203 | ≥80% support |
| KEGG | K14785 | ESF2, ABT1 — Ribosome biogenesis | 172 / 226 | 76.1% | 98.3% of 175 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora spathulata | ENSEWQP00005011235.1 | XP_029197856.2 | activator of basal transcription 1-like [Acropora millepora] | O74362 Pre-rRNA-processing protein esf2 OS=Schizosaccharomyces pomb | JBrowse |
| Acropora spathulata | ENSEWQP00005011244.1 | XP_029197856.2 | activator of basal transcription 1-like [Acropora millepora] | Q148M8 Activator of basal transcription 1 OS=Bos taurus OX=9913 GN= | JBrowse |
| Acropora spathulata | ENSEWQP00005011252.1 | XP_029197856.2 | activator of basal transcription 1-like [Acropora millepora] | O74362 Pre-rRNA-processing protein esf2 OS=Schizosaccharomyces pomb | JBrowse |
