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Support counts the member genes carrying the term. % of genes is that count over all 290 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR47330 | POLY(U)-BINDING-SPLICING FACTOR PUF60-B-RELATED | 243 / 290 | 83.8% | 99.6% of 244 | ≥80% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 243 / 290 | 83.8% | 99.6% of 244 | ≥80% support |
| GO | GO:0000380 Biological Process | alternative mRNA splicing, via spliceosome | 243 / 290 | 83.8% | 99.6% of 244 | ≥80% support |
| GO | GO:0000381 Biological Process | regulation of alternative mRNA splicing, via spliceosome | 243 / 290 | 83.8% | 99.6% of 244 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 243 / 290 | 83.8% | 99.6% of 244 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 243 / 290 | 83.8% | 99.6% of 244 | ≥80% support |
| GO | GO:0006376 Biological Process | mRNA splice site recognition | 243 / 290 | 83.8% | 99.6% of 244 | ≥80% support |
| GO | GO:0071011 Cellular Component | precatalytic spliceosome | 243 / 290 | 83.8% | 99.6% of 244 | ≥80% support |
| GO | GO:0071013 Cellular Component | catalytic step 2 spliceosome | 243 / 290 | 83.8% | 99.6% of 244 | ≥80% support |
| KEGG | K12838 | PUF60 — Spliceosome | 240 / 290 | 82.8% | 100.0% of 240 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Candelabrum cocksii | ENSQNNP00000019768.1 | XP_002156035.2 | poly(U)-binding-splicing factor PUF60 isoform X4 [Hydra vulgaris] | Q3UEB3 Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=100 | JBrowse |
| Candelabrum cocksii | ENSQNNP00000019774.1 | XP_002156035.2 | poly(U)-binding-splicing factor PUF60 isoform X4 [Hydra vulgaris] | Q3UEB3 Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=100 | JBrowse |
