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This orthogroup contains 275 genes from 143 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 275 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR19854 | TRANSDUCIN BETA-LIKE 3 | 241 / 275 | 87.6% | 99.6% of 242 | ≥80% support |
| Pfam | PF00400 | WD40 — WD domain, G-beta repeat | 224 / 275 | 81.5% | 95.3% of 235 | ≥80% support |
| GO | GO:0000472 Biological Process | endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 241 / 275 | 87.6% | 99.6% of 242 | ≥80% support |
| GO | GO:0000480 Biological Process | endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 241 / 275 | 87.6% | 99.6% of 242 | ≥80% support |
| GO | GO:0005730 Cellular Component | nucleolus | 241 / 275 | 87.6% | 99.6% of 242 | ≥80% support |
| GO | GO:0030686 Cellular Component | 90S preribosome | 241 / 275 | 87.6% | 99.6% of 242 | ≥80% support |
| GO | GO:0034511 Molecular Function | U3 snoRNA binding | 241 / 275 | 87.6% | 99.6% of 242 | ≥80% support |
| GO | GO:0005515 Molecular Function | protein binding | 232 / 275 | 84.4% | 95.9% of 242 | ≥80% support |
| Pfam | PF08625 | Utp13 | 203 / 275 | 73.8% | 86.4% of 235 | ≥50% support |
| GO | GO:0032040 Cellular Component | small-subunit processome | 204 / 275 | 74.2% | 84.3% of 242 | ≥50% support |
| GO | GO:0006364 Biological Process | rRNA processing | 203 / 275 | 73.8% | 83.9% of 242 | ≥50% support |
| KEGG | K14555 | UTP13, TBL3 — Ribosome biogenesis | 180 / 275 | 65.5% | 98.4% of 183 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Candelabrum cocksii | ENSQNNP00000003787.1 | XP_047145085.1 | transducin beta-like protein 3 [Hydra vulgaris] | Q2KJJ5 Transducin beta-like protein 3 OS=Bos taurus OX=9913 GN=TBL3 | JBrowse |
| Candelabrum cocksii | ENSQNNP00000003812.1 | XP_047145085.1 | transducin beta-like protein 3 [Hydra vulgaris] | Q8C4J7 Transducin beta-like protein 3 OS=Mus musculus OX=10090 GN=T | JBrowse |
