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This orthogroup contains 321 genes from 146 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 321 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR47958 | ATP-DEPENDENT RNA HELICASE DBP3 | 241 / 321 | 75.1% | 87.0% of 277 | ≥50% support |
| Pfam | PF00270 | DEAD | 241 / 321 | 75.1% | 88.3% of 273 | ≥50% support |
| Pfam | PF00271 | Helicase_C — Helicase conserved C-terminal domain | 240 / 321 | 74.8% | 87.9% of 273 | ≥50% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 241 / 321 | 75.1% | 87.0% of 277 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 241 / 321 | 75.1% | 87.0% of 277 | ≥50% support |
| GO | GO:0003723 Molecular Function | RNA binding | 241 / 321 | 75.1% | 87.0% of 277 | ≥50% support |
| GO | GO:0005524 Molecular Function | ATP binding | 241 / 321 | 75.1% | 87.0% of 277 | ≥50% support |
| GO | GO:0071013 Cellular Component | catalytic step 2 spliceosome | 241 / 321 | 75.1% | 87.0% of 277 | ≥50% support |
| GO | GO:0003724 Molecular Function | RNA helicase activity | 220 / 321 | 68.5% | 79.4% of 277 | ≥50% support |
| KEGG | K12858 | DDX23, PRP28 — Spliceosome | 201 / 321 | 62.6% | 95.3% of 211 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Cyphastrea salae | ENSOFVP00000022340.1 | XP_027042127.1 | probable ATP-dependent RNA helicase DDX23 [Pocillopora damicornis] | Q9BUQ8 Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens OX | JBrowse |
