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This orthogroup contains 258 genes from 139 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 258 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12831 | TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED | 224 / 258 | 86.8% | 100.0% of 224 | ≥80% support |
| Pfam | PF03850 | Tfb4 | 224 / 258 | 86.8% | 100.0% of 224 | ≥80% support |
| GO | GO:0000439 Cellular Component | transcription factor TFIIH core complex | 224 / 258 | 86.8% | 100.0% of 224 | ≥80% support |
| GO | GO:0005675 Cellular Component | transcription factor TFIIH holo complex | 224 / 258 | 86.8% | 100.0% of 224 | ≥80% support |
| GO | GO:0006289 Biological Process | nucleotide-excision repair | 224 / 258 | 86.8% | 100.0% of 224 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 224 / 258 | 86.8% | 100.0% of 224 | ≥80% support |
| GO | GO:0070816 Biological Process | obsolete phosphorylation of RNA polymerase II C-terminal domain | 224 / 258 | 86.8% | 100.0% of 224 | ≥80% support |
| KEGG | K03143 | TFIIH3, GTF2H3, TFB4 — DNA repair and recombination proteins | 165 / 258 | 64.0% | 99.4% of 166 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Cyphastrea salae | ENSOFVP00000012800.1 | XP_020613660.1 | general transcription factor IIH subunit 3-like isoform X3 [Orbicella faveolata] | Q13889 General transcription factor IIH subunit 3 OS=Homo sapiens O | JBrowse |
| Cyphastrea salae | ENSOFVP00000012812.1 | XP_020613657.1 | general transcription factor IIH subunit 3-like isoform X1 [Orbicella faveolata] | Q13889 General transcription factor IIH subunit 3 OS=Homo sapiens O | JBrowse |
| Cyphastrea salae | ENSOFVP00000012827.1 | XP_020613660.1 | general transcription factor IIH subunit 3-like isoform X3 [Orbicella faveolata] | Q13889 General transcription factor IIH subunit 3 OS=Homo sapiens O | JBrowse |
