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This orthogroup contains 609 genes from 141 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 609 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 522 / 609 | 85.7% | 98.5% of 530 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 535 / 609 | 87.9% | 100.0% of 535 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 522 / 609 | 85.7% | 97.6% of 535 | ≥80% support |
| PANTHER | PTHR23147 | SERINE/ARGININE RICH SPLICING FACTOR | 345 / 609 | 56.7% | 66.5% of 519 | ≥50% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 348 / 609 | 57.1% | 65.1% of 535 | ≥50% support |
| GO | GO:0016607 Cellular Component | nuclear speck | 345 / 609 | 56.7% | 64.5% of 535 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Desmophyllum pertusum | KAJ7323397.1 | KAJ7323397.1 | hypothetical protein OS493_031872 [Desmophyllum pertusum] | Q3T106 Serine/arginine-rich splicing factor 7 OS=Bos taurus OX=9913 | JBrowse |
| Desmophyllum pertusum | KAJ7333793.1 | KAJ7333793.1 | hypothetical protein OS493_015884 [Desmophyllum pertusum] | Q02427 RNA-binding protein 1 OS=Drosophila melanogaster OX=7227 GN= | JBrowse |
| Desmophyllum pertusum | KAJ7388730.1 | KAJ7388730.1 | sequence-specific mRNA binding [Desmophyllum pertusum] | Q3SZR8 Serine/arginine-rich splicing factor 3 OS=Bos taurus OX=9913 | JBrowse |
