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This orthogroup contains 467 genes from 140 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 467 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR24023 | COLLAGEN ALPHA | 316 / 467 | 67.7% | 82.9% of 381 | ≥50% support |
| Pfam | PF01413 | C4 — C-terminal tandem repeated domain in type 4 procollagen | 347 / 467 | 74.3% | 90.6% of 383 | ≥50% support |
| Pfam | PF01391 | Collagen | 333 / 467 | 71.3% | 87.0% of 383 | ≥50% support |
| GO | GO:0005201 Molecular Function | extracellular matrix structural constituent | 347 / 467 | 74.3% | 96.1% of 361 | ≥50% support |
| GO | GO:0005581 Cellular Component | collagen trimer | 347 / 467 | 74.3% | 96.1% of 361 | ≥50% support |
| GO | GO:0005615 Cellular Component | extracellular space | 318 / 467 | 68.1% | 88.1% of 361 | ≥50% support |
| GO | GO:0031012 Cellular Component | extracellular matrix | 316 / 467 | 67.7% | 87.5% of 361 | ≥50% support |
| GO | GO:0062023 Cellular Component | collagen-containing extracellular matrix | 300 / 467 | 64.2% | 83.1% of 361 | ≥50% support |
| GO | GO:0030020 Molecular Function | extracellular matrix structural constituent conferring tensile strength | 299 / 467 | 64.0% | 82.8% of 361 | ≥50% support |
| GO | GO:0030198 Biological Process | extracellular matrix organization | 299 / 467 | 64.0% | 82.8% of 361 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Desmophyllum pertusum | KAJ7370644.1 | KAJ7370644.1 | Collagen alpha-2(IV) chain [Desmophyllum pertusum] | Q7SIB3 Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 | JBrowse |
| Desmophyllum pertusum | KAJ7390300.1 | KAJ7390300.1 | collagen [Desmophyllum pertusum] | Q7SIB3 Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 | JBrowse |
| Desmophyllum pertusum | KAJ7390303.1 | KAJ7390303.1 | collagen [Desmophyllum pertusum] | Q7SIB3 Collagen alpha-2(IV) chain (Fragment) OS=Bos taurus OX=9913 | JBrowse |
