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This orthogroup contains 273 genes from 142 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 273 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR15239 | NUCLEAR EXPORT MEDIATOR FACTOR NEMF | 234 / 273 | 85.7% | 100.0% of 234 | ≥80% support |
| GO | GO:0000049 Molecular Function | tRNA binding | 234 / 273 | 85.7% | 100.0% of 234 | ≥80% support |
| GO | GO:0043023 Molecular Function | ribosomal large subunit binding | 234 / 273 | 85.7% | 100.0% of 234 | ≥80% support |
| GO | GO:0072344 Biological Process | rescue of stalled ribosome | 234 / 273 | 85.7% | 100.0% of 234 | ≥80% support |
| GO | GO:1990112 Cellular Component | RQC complex | 234 / 273 | 85.7% | 100.0% of 234 | ≥80% support |
| GO | GO:1990116 Biological Process | ribosome-associated ubiquitin-dependent protein catabolic process | 233 / 273 | 85.4% | 99.6% of 234 | ≥80% support |
| Pfam | PF05670 | NFACT-R_1 — NFACT protein RNA binding domain | 178 / 273 | 65.2% | 78.1% of 228 | ≥50% support |
| Pfam | PF11923 | NFACT-C — NFACT protein C-terminal domain | 169 / 273 | 61.9% | 74.1% of 228 | ≥50% support |
| Pfam | PF05833 | NFACT_N — NFACT N-terminal and middle domains | 162 / 273 | 59.3% | 71.1% of 228 | ≥50% support |
| KEGG | K24971 | NEMF, RQC2 — Ribosome biogenesis | 162 / 273 | 59.3% | 97.6% of 166 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Desmophyllum pertusum | KAJ7365341.1 | KAJ7365341.1 | hypothetical protein OS493_005446 [Desmophyllum pertusum] | Q8CCP0 Ribosome quality control complex subunit NEMF OS=Mus musculu | JBrowse |
| Desmophyllum pertusum | KAJ7365342.1 | KAJ7365342.1 | hypothetical protein OS493_005448, partial [Desmophyllum pertusum] | – | JBrowse |
| Desmophyllum pertusum | KAJ7365343.1 | KAJ7365343.1 | hypothetical protein OS493_005449, partial [Desmophyllum pertusum] | O60524 Ribosome quality control complex subunit NEMF OS=Homo sapien | JBrowse |
