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This orthogroup contains 263 genes from 139 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 263 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12755 | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P | 238 / 263 | 90.5% | 100.0% of 238 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 238 / 263 | 90.5% | 100.0% of 238 | ≥80% support |
| GO | GO:0006378 Biological Process | obsolete mRNA polyadenylation | 238 / 263 | 90.5% | 100.0% of 238 | ≥80% support |
| GO | GO:0006388 Biological Process | tRNA splicing, via endonucleolytic cleavage and ligation | 238 / 263 | 90.5% | 100.0% of 238 | ≥80% support |
| GO | GO:0006396 Biological Process | RNA processing | 238 / 263 | 90.5% | 100.0% of 238 | ≥80% support |
| GO | GO:0051731 Molecular Function | polynucleotide 5'-hydroxyl-kinase activity | 238 / 263 | 90.5% | 100.0% of 238 | ≥80% support |
| Pfam | PF16575 | CLP1_P — mRNA cleavage and polyadenylation factor CLP1 P-loop | 191 / 263 | 72.6% | 79.3% of 241 | ≥50% support |
| Pfam | PF06807 | Clp1 | 180 / 263 | 68.4% | 74.7% of 241 | ≥50% support |
| Pfam | PF16573 | CLP1_N — N-terminal beta-sandwich domain of polyadenylation factor | 171 / 263 | 65.0% | 71.0% of 241 | ≥50% support |
| GO | GO:0031124 Biological Process | mRNA 3'-end processing | 180 / 263 | 68.4% | 75.6% of 238 | ≥50% support |
| KEGG | K14399 | CLP1, HERB — Messenger RNA biogenesis | 155 / 263 | 58.9% | 98.7% of 157 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Desmophyllum pertusum | KAJ7384174.1 | KAJ7384174.1 | Cleavage polyadenylation factor subunit clp1 [Desmophyllum pertusum] | A7RG82 Protein CLP1 homolog OS=Nematostella vectensis OX=45351 GN=v | JBrowse |
| Desmophyllum pertusum | KAJ7384175.1 | KAJ7384175.1 | Cleavage polyadenylation factor subunit clp1 [Desmophyllum pertusum] | A7RG82 Protein CLP1 homolog OS=Nematostella vectensis OX=45351 GN=v | JBrowse |
| Desmophyllum pertusum | KAJ7384176.1 | KAJ7384176.1 | Cleavage polyadenylation factor subunit clp1 [Desmophyllum pertusum] | A7RG82 Protein CLP1 homolog OS=Nematostella vectensis OX=45351 GN=v | JBrowse |
