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This orthogroup contains 221 genes from 144 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 221 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR45735 | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 | 195 / 221 | 88.2% | 100.0% of 195 | ≥80% support |
| Pfam | PF14327 | CSTF2_hinge — Hinge domain of cleavage stimulation factor subunit 2 | 190 / 221 | 86.0% | 96.5% of 197 | ≥80% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 181 / 221 | 81.9% | 91.9% of 197 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 195 / 221 | 88.2% | 99.0% of 197 | ≥80% support |
| GO | GO:0005847 Cellular Component | mRNA cleavage and polyadenylation specificity factor complex | 195 / 221 | 88.2% | 99.0% of 197 | ≥80% support |
| GO | GO:0098789 Biological Process | obsolete pre-mRNA cleavage required for polyadenylation | 195 / 221 | 88.2% | 99.0% of 197 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 181 / 221 | 81.9% | 91.9% of 197 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 181 / 221 | 81.9% | 91.9% of 197 | ≥80% support |
| Pfam | PF14304 | CSTF_C — Transcription termination and cleavage factor C-terminal | 168 / 221 | 76.0% | 85.3% of 197 | ≥50% support |
| GO | GO:0031124 Biological Process | mRNA 3'-end processing | 168 / 221 | 76.0% | 85.3% of 197 | ≥50% support |
| KEGG | K14407 | CSTF2, RNA15 — Messenger RNA biogenesis | 155 / 221 | 70.1% | 100.0% of 155 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Desmophyllum pertusum | KAJ7363460.1 | KAJ7363460.1 | Cleavage stimulation factor subunit 2 [Desmophyllum pertusum] | Q8BIQ5 Cleavage stimulation factor subunit 2 OS=Mus musculus OX=100 | JBrowse |
