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This orthogroup contains 1,065 genes from 148 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 1,065 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12619 | RFX TRANSCRIPTION FACTOR FAMILY | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| Pfam | PF02257 | RFX_DNA_binding — RFX DNA-binding domain | 855 / 1,065 | 80.3% | 99.8% of 857 | ≥80% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 916 / 1,065 | 86.0% | 100.0% of 916 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 855 / 1,065 | 80.3% | 93.3% of 916 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 855 / 1,065 | 80.3% | 93.3% of 916 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Eunicella cavolini | ENSLDHP00000016183.1 | CAB4010805.1 | DNA-binding RFX6 [Paramuricea clavata] | Q8C7R7 DNA-binding protein RFX6 OS=Mus musculus OX=10090 GN=Rfx6 PE | JBrowse |
| Eunicella cavolini | ENSLDHP00000016189.1 | CAB4010805.1 | DNA-binding RFX6 [Paramuricea clavata] | D2HNW6 DNA-binding protein RFX6 OS=Ailuropoda melanoleuca OX=9646 G | JBrowse |
| Eunicella cavolini | ENSLDHP00000020027.1 | CAB3996342.1 | DNA-binding RFX6 [Paramuricea clavata] | Q5RJA1 DNA-binding protein RFX6 OS=Danio rerio OX=7955 GN=rfx6 PE=2 | JBrowse |
| Eunicella cavolini | ENSLDHP00000030047.1 | XP_028412988.1 | DNA-binding protein RFX2-like isoform X2 [Dendronephthya gigantea] | B2GV50 DNA-binding protein RFX2 OS=Rattus norvegicus OX=10116 GN=Rf | JBrowse |
| Eunicella cavolini | ENSLDHP00000030060.1 | XP_028412988.1 | DNA-binding protein RFX2-like isoform X2 [Dendronephthya gigantea] | P48377 MHC class II regulatory factor RFX1 OS=Mus musculus OX=10090 | JBrowse |
| Eunicella cavolini | ENSLDHP00000030073.1 | XP_028412990.1 | transcription factor RFX3-like isoform X4 [Dendronephthya gigantea] | P48377 MHC class II regulatory factor RFX1 OS=Mus musculus OX=10090 | JBrowse |
| Eunicella cavolini | ENSLDHP00000030082.1 | XP_028412987.1 | DNA-binding protein RFX2-like isoform X1 [Dendronephthya gigantea] | P48377 MHC class II regulatory factor RFX1 OS=Mus musculus OX=10090 | JBrowse |
| Eunicella cavolini | ENSLDHP00000030099.1 | XP_028412987.1 | DNA-binding protein RFX2-like isoform X1 [Dendronephthya gigantea] | P48377 MHC class II regulatory factor RFX1 OS=Mus musculus OX=10090 | JBrowse |
| Eunicella cavolini | ENSLDHP00000037074.1 | CAB3979836.1 | Transcription factor RFX4 [Paramuricea clavata] | Q33E94 Transcription factor RFX4 OS=Homo sapiens OX=9606 GN=RFX4 PE | JBrowse |
| Eunicella cavolini | ENSLDHP00000037087.1 | CAB3979836.1 | Transcription factor RFX4 [Paramuricea clavata] | Q33E94 Transcription factor RFX4 OS=Homo sapiens OX=9606 GN=RFX4 PE | JBrowse |
