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Support counts the member genes carrying the term. % of genes is that count over all 307 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 275 / 307 | 89.6% | 100.0% of 275 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 275 / 307 | 89.6% | 99.6% of 276 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 273 / 307 | 88.9% | 98.9% of 276 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 265 / 307 | 86.3% | 96.0% of 276 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 265 / 307 | 86.3% | 96.0% of 276 | ≥80% support |
| PANTHER | PTHR24338 | HOMEOBOX PROTEIN MSX | 243 / 307 | 79.2% | 88.4% of 275 | ≥50% support |
| GO | GO:0000977 Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 243 / 307 | 79.2% | 88.0% of 276 | ≥50% support |
| GO | GO:0048598 Biological Process | embryonic morphogenesis | 243 / 307 | 79.2% | 88.0% of 276 | ≥50% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 241 / 307 | 78.5% | 87.3% of 276 | ≥50% support |
| KEGG | K09341 | MSX — Transcription factors | 172 / 307 | 56.0% | 99.4% of 173 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Eunicella cavolini | ENSLDHP00000042350.1 | CAB3978971.1 | homeobox MSX-1-like [Paramuricea clavata] | P52953 Homeobox protein MSX-2 (Fragment) OS=Rattus norvegicus OX=10 | JBrowse |
| Eunicella cavolini | ENSLDHP00000042354.1 | CAB3978971.1 | homeobox MSX-1-like [Paramuricea clavata] | Q01703 Homeobox protein MSH-C OS=Danio rerio OX=7955 GN=msxc PE=2 S | JBrowse |
| Eunicella cavolini | ENSLDHP00000042360.1 | CAB3978971.1 | homeobox MSX-1-like [Paramuricea clavata] | Q01703 Homeobox protein MSH-C OS=Danio rerio OX=7955 GN=msxc PE=2 S | JBrowse |
