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This orthogroup contains 259 genes from 145 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 259 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR15921 | PRE-MRNA CLEAVAGE COMPLEX II | 216 / 259 | 83.4% | 100.0% of 216 | ≥80% support |
| GO | GO:0000993 Molecular Function | RNA polymerase II complex binding | 216 / 259 | 83.4% | 100.0% of 216 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 216 / 259 | 83.4% | 100.0% of 216 | ≥80% support |
| GO | GO:0005737 Cellular Component | cytoplasm | 216 / 259 | 83.4% | 100.0% of 216 | ≥80% support |
| GO | GO:0005849 Cellular Component | mRNA cleavage factor complex | 216 / 259 | 83.4% | 100.0% of 216 | ≥80% support |
| GO | GO:0006369 Biological Process | termination of RNA polymerase II transcription | 216 / 259 | 83.4% | 100.0% of 216 | ≥80% support |
| GO | GO:0006378 Biological Process | obsolete mRNA polyadenylation | 216 / 259 | 83.4% | 100.0% of 216 | ≥80% support |
| GO | GO:0031124 Biological Process | mRNA 3'-end processing | 216 / 259 | 83.4% | 100.0% of 216 | ≥80% support |
| Pfam | PF04818 | CID | 178 / 259 | 68.7% | 98.3% of 181 | ≥50% support |
| KEGG | K14400 | PCF11 — Messenger RNA biogenesis | 141 / 259 | 54.4% | 97.9% of 144 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Hemicorallium imperiale | evm.model.Chr01.880 | XP_028402056.1 | pre-mRNA cleavage complex 2 protein Pcf11-like [Dendronephthya gigantea] | G3X9Z4 Pre-mRNA cleavage complex 2 protein Pcf11 OS=Mus musculus OX | JBrowse |
