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This orthogroup contains 249 genes from 141 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 249 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR16105 | UNCHARACTERIZED | 218 / 249 | 87.6% | 100.0% of 218 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 218 / 249 | 87.6% | 99.5% of 219 | ≥80% support |
| GO | GO:0005689 Cellular Component | U12-type spliceosomal complex | 218 / 249 | 87.6% | 99.5% of 219 | ≥80% support |
| GO | GO:0030626 Molecular Function | U12 snRNA binding | 218 / 249 | 87.6% | 99.5% of 219 | ≥80% support |
| GO | GO:0097157 Molecular Function | pre-mRNA intronic binding | 218 / 249 | 87.6% | 99.5% of 219 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 205 / 249 | 82.3% | 93.6% of 219 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 201 / 249 | 80.7% | 91.8% of 219 | ≥80% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 192 / 249 | 77.1% | 100.0% of 192 | ≥50% support |
| KEGG | K13157 | RNPC3 — Spliceosome | 169 / 249 | 67.9% | 99.4% of 170 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Hemicorallium imperiale | evm.model.Chr05.1053 | CAB3982801.1 | RNA-binding 40 [Paramuricea clavata] | F1Q8J0 RNA-binding region-containing protein 3 OS=Danio rerio OX=79 | JBrowse |
