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This orthogroup contains 218 genes from 141 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 218 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11142 | PSEUDOURIDYLATE SYNTHASE | 181 / 218 | 83.0% | 99.5% of 182 | ≥80% support |
| Pfam | PF01416 | PseudoU_synth_1 — tRNA pseudouridine synthase | 176 / 218 | 80.7% | 99.4% of 177 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 185 / 218 | 84.9% | 100.0% of 185 | ≥80% support |
| GO | GO:0009982 Molecular Function | pseudouridine synthase activity | 185 / 218 | 84.9% | 100.0% of 185 | ≥80% support |
| GO | GO:0001522 Biological Process | pseudouridine synthesis | 184 / 218 | 84.4% | 99.5% of 185 | ≥80% support |
| GO | GO:0009451 Biological Process | RNA modification | 184 / 218 | 84.4% | 99.5% of 185 | ≥80% support |
| GO | GO:0005737 Cellular Component | cytoplasm | 182 / 218 | 83.5% | 98.4% of 185 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 181 / 218 | 83.0% | 97.8% of 185 | ≥80% support |
| GO | GO:0031119 Biological Process | tRNA pseudouridine synthesis | 181 / 218 | 83.0% | 97.8% of 185 | ≥80% support |
| GO | GO:1990481 Biological Process | mRNA pseudouridine synthesis | 181 / 218 | 83.0% | 97.8% of 185 | ≥80% support |
| KEGG | K01855 | PUS3, DEG1 — Transfer RNA biogenesis | 148 / 218 | 67.9% | 99.3% of 149 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Hemicorallium imperiale | evm.model.Chr08.492 | CAB4005365.1 | tRNA pseudouridine(38 39) synthase-like [Paramuricea clavata] | Q3SX07 tRNA pseudouridine(38/39) synthase OS=Bos taurus OX=9913 GN= | JBrowse |
| Hemicorallium imperiale | evm.model.Chr08.493 | XP_028394094.1 | tRNA pseudouridine(38/39) synthase-like [Dendronephthya gigantea] | Q3SX07 tRNA pseudouridine(38/39) synthase OS=Bos taurus OX=9913 GN= | JBrowse |
