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This orthogroup contains 213 genes from 137 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 213 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR19965 | RNA AND EXPORT FACTOR BINDING PROTEIN | 179 / 213 | 84.0% | 100.0% of 179 | ≥80% support |
| GO | GO:0003729 Molecular Function | mRNA binding | 179 / 213 | 84.0% | 99.4% of 180 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 179 / 213 | 84.0% | 99.4% of 180 | ≥80% support |
| GO | GO:0006406 Biological Process | mRNA export from nucleus | 179 / 213 | 84.0% | 99.4% of 180 | ≥80% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 170 / 213 | 79.8% | 93.9% of 181 | ≥50% support |
| Pfam | PF13865 | FoP_duplication — C-terminal duplication domain of Friend of PRMT1 | 149 / 213 | 70.0% | 82.3% of 181 | ≥50% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 170 / 213 | 79.8% | 94.4% of 180 | ≥50% support |
| GO | GO:0003723 Molecular Function | RNA binding | 170 / 213 | 79.8% | 94.4% of 180 | ≥50% support |
| KEGG | K12881 | THOC4, ALY — Spliceosome | 159 / 213 | 74.7% | 100.0% of 159 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Hemicorallium imperiale | evm.model.Chr11.311 | XP_028395517.1 | THO complex subunit 4-like [Dendronephthya gigantea] | Q3T0I4 THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 S | JBrowse |
