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Support counts the member genes carrying the term. % of genes is that count over all 111 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| GO | GO:0003899 Molecular Function | DNA-directed 5'-3' RNA polymerase activity | 102 / 111 | 91.9% | 100.0% of 102 | ≥80% support |
| GO | GO:0006351 Biological Process | DNA-templated transcription | 102 / 111 | 91.9% | 100.0% of 102 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 101 / 111 | 91.0% | 99.0% of 102 | ≥80% support |
| PANTHER | PTHR19376 | DNA-DIRECTED RNA POLYMERASE | 77 / 111 | 69.4% | 76.2% of 101 | ≥50% support |
| Pfam | PF04998 | RNA_pol_Rpb1_5 — RNA polymerase Rpb1, domain 5 | 68 / 111 | 61.3% | 67.3% of 101 | ≥50% support |
| Pfam | PF04983 | RNA_pol_Rpb1_3 — RNA polymerase Rpb1, domain 3 | 62 / 111 | 55.9% | 61.4% of 101 | ≥50% support |
| Pfam | PF05000 | RNA_pol_Rpb1_4 — RNA polymerase Rpb1, domain 4 | 59 / 111 | 53.2% | 58.4% of 101 | ≥50% support |
| Pfam | PF00623 | RNA_pol_Rpb1_2 — RNA polymerase Rpb1, domain 2 | 58 / 111 | 52.3% | 57.4% of 101 | ≥50% support |
| Pfam | PF04997 | RNA_pol_Rpb1_1 — RNA polymerase Rpb1, domain 1 | 58 / 111 | 52.3% | 57.4% of 101 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Hemicorallium imperiale | evm.model.Contig123.282 | SYV89769.1 | DNA-directed RNA polymerase subunit beta', partial [Metamycoplasma alkalescens] | A5IZ52 DNA-directed RNA polymerase subunit beta' OS=Mycoplasmopsis | JBrowse |
| Hemicorallium imperiale | evm.model.Contig123.283 | MCK5806810.1 | DNA-directed RNA polymerase subunit beta' [Mycoplasmataceae bacterium] | Q6KI08 DNA-directed RNA polymerase subunit beta' OS=Mycoplasma mobi | JBrowse |
| Hemicorallium imperiale | evm.model.Contig123.284 | NQZ66296.1 | DNA-directed RNA polymerase subunit beta [Mycoplasmatales bacterium] | Q6KI09 DNA-directed RNA polymerase subunit beta OS=Mycoplasma mobil | JBrowse |
| Hemicorallium imperiale | evm.model.Contig128.60 | OED34172.1 | DNA-directed RNA polymerase subunit beta' [PVC group bacterium (ex Bugula neritina AB1)] | B3E7S9 DNA-directed RNA polymerase subunit beta' OS=Trichlorobacter | JBrowse |
| Hemicorallium imperiale | evm.model.Contig128.61 | OED34171.1 | DNA-directed RNA polymerase subunit beta [PVC group bacterium (ex Bugula neritina AB1)] | B9MQG5 DNA-directed RNA polymerase subunit beta OS=Caldicellulosiru | JBrowse |
| Hemicorallium imperiale | evm.model.Contig133.48 | MCA1949727.1 | DNA-directed RNA polymerase subunit beta [Treponema sp.] | Q73JJ7 DNA-directed RNA polymerase subunit beta OS=Treponema dentic | JBrowse |
| Hemicorallium imperiale | evm.model.Contig133.49 | WP_037550059.1 | DNA-directed RNA polymerase subunit beta' [Spirochaeta lutea] | A1QZH6 DNA-directed RNA polymerase subunit beta' OS=Borrelia turica | JBrowse |
| Hemicorallium imperiale | evm.model.Contig136.147 | QOW94421.1 | RNA polymerase subunit beta, partial [Globicatella sanguinis] | P47767 DNA-directed RNA polymerase subunit beta OS=Spiroplasma citr | JBrowse |
