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This orthogroup contains 353 genes from 143 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 353 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13162 | CCR4-NOT TRANSCRIPTION COMPLEX | 289 / 353 | 81.9% | 99.0% of 292 | ≥80% support |
| GO | GO:0000288 Biological Process | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | 289 / 353 | 81.9% | 99.0% of 292 | ≥80% support |
| GO | GO:0000932 Cellular Component | P-body | 289 / 353 | 81.9% | 99.0% of 292 | ≥80% support |
| GO | GO:0017148 Biological Process | negative regulation of translation | 289 / 353 | 81.9% | 99.0% of 292 | ≥80% support |
| GO | GO:0030015 Cellular Component | CCR4-NOT core complex | 289 / 353 | 81.9% | 99.0% of 292 | ≥80% support |
| GO | GO:0060090 Molecular Function | molecular adaptor activity | 289 / 353 | 81.9% | 99.0% of 292 | ≥80% support |
| Pfam | PF04054 | Not1 | 220 / 353 | 62.3% | 78.9% of 279 | ≥50% support |
| Pfam | PF16415 | CNOT1_CAF1_bind — CCR4-NOT transcription complex subunit 1 CAF1-binding domain | 207 / 353 | 58.6% | 74.2% of 279 | ≥50% support |
| Pfam | PF16417 | CNOT1_TTP_bind — CCR4-NOT transcription complex subunit 1 TTP binding domain | 205 / 353 | 58.1% | 73.5% of 279 | ≥50% support |
| Pfam | PF12842 | DUF3819 | 204 / 353 | 57.8% | 73.1% of 279 | ≥50% support |
| Pfam | PF16418 | CNOT1_HEAT — CCR4-NOT transcription complex subunit 1 HEAT repeat | 204 / 353 | 57.8% | 73.1% of 279 | ≥50% support |
| KEGG | K12604 | CNOT1, NOT1 — Messenger RNA biogenesis | 194 / 353 | 55.0% | 97.0% of 200 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Haliclystus octoradiatus | BRAKERHOCP00005014425.1 | XP_047125776.1 | CCR4-NOT transcription complex subunit 1 isoform X2 [Hydra vulgaris] | A1A5H6 CCR4-NOT transcription complex subunit 1 OS=Danio rerio OX=7 | JBrowse |
| Haliclystus octoradiatus | g18069.t1.1 | none | – | JBrowse |
