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Support counts the member genes carrying the term. % of genes is that count over all 251 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12856 | TRANSCRIPTION INITIATION FACTOR IIH-RELATED | 208 / 251 | 82.9% | 99.5% of 209 | ≥80% support |
| GO | GO:0000439 Cellular Component | transcription factor TFIIH core complex | 208 / 251 | 82.9% | 99.5% of 209 | ≥80% support |
| GO | GO:0005675 Cellular Component | transcription factor TFIIH holo complex | 208 / 251 | 82.9% | 99.5% of 209 | ≥80% support |
| GO | GO:0006281 Biological Process | DNA repair | 208 / 251 | 82.9% | 99.5% of 209 | ≥80% support |
| GO | GO:0006289 Biological Process | nucleotide-excision repair | 208 / 251 | 82.9% | 99.5% of 209 | ≥80% support |
| GO | GO:0006351 Biological Process | DNA-templated transcription | 208 / 251 | 82.9% | 99.5% of 209 | ≥80% support |
| GO | GO:0006360 Biological Process | transcription by RNA polymerase I | 208 / 251 | 82.9% | 99.5% of 209 | ≥80% support |
| GO | GO:0006366 Biological Process | transcription by RNA polymerase II | 208 / 251 | 82.9% | 99.5% of 209 | ≥80% support |
| GO | GO:0070816 Biological Process | obsolete phosphorylation of RNA polymerase II C-terminal domain | 208 / 251 | 82.9% | 99.5% of 209 | ≥80% support |
| Pfam | PF08567 | PH_TFIIH — TFIIH p62 subunit, N-terminal domain | 180 / 251 | 71.7% | 94.2% of 191 | ≥50% support |
| Pfam | PF03909 | BSD | 177 / 251 | 70.5% | 92.7% of 191 | ≥50% support |
| KEGG | K03141 | TFIIH1, GTF2H1, TFB1 — DNA repair and recombination proteins | 166 / 251 | 66.1% | 98.2% of 169 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Haliclystus octoradiatus | BRAKERHOCP00005017978.1 | XP_012553893.1 | general transcription factor IIH subunit 1 isoform X1 [Hydra vulgaris] | Q9DBA9 General transcription factor IIH subunit 1 OS=Mus musculus O | JBrowse |
| Haliclystus octoradiatus | g98.t1.1 | none | – | JBrowse |
