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Support counts the member genes carrying the term. % of genes is that count over all 111 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| GO | GO:0003899 Molecular Function | DNA-directed 5'-3' RNA polymerase activity | 102 / 111 | 91.9% | 100.0% of 102 | ≥80% support |
| GO | GO:0006351 Biological Process | DNA-templated transcription | 102 / 111 | 91.9% | 100.0% of 102 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 101 / 111 | 91.0% | 99.0% of 102 | ≥80% support |
| PANTHER | PTHR19376 | DNA-DIRECTED RNA POLYMERASE | 77 / 111 | 69.4% | 76.2% of 101 | ≥50% support |
| Pfam | PF04998 | RNA_pol_Rpb1_5 — RNA polymerase Rpb1, domain 5 | 68 / 111 | 61.3% | 67.3% of 101 | ≥50% support |
| Pfam | PF04983 | RNA_pol_Rpb1_3 — RNA polymerase Rpb1, domain 3 | 62 / 111 | 55.9% | 61.4% of 101 | ≥50% support |
| Pfam | PF05000 | RNA_pol_Rpb1_4 — RNA polymerase Rpb1, domain 4 | 59 / 111 | 53.2% | 58.4% of 101 | ≥50% support |
| Pfam | PF00623 | RNA_pol_Rpb1_2 — RNA polymerase Rpb1, domain 2 | 58 / 111 | 52.3% | 57.4% of 101 | ≥50% support |
| Pfam | PF04997 | RNA_pol_Rpb1_1 — RNA polymerase Rpb1, domain 1 | 58 / 111 | 52.3% | 57.4% of 101 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Hydra oligactis | HOLI00001.G52345 | WP_045202248.1 | MULTISPECIES: DNA-directed RNA polymerase subunit beta' [Pseudomonas] | Q1IFX2 DNA-directed RNA polymerase subunit beta' OS=Pseudomonas ent | JBrowse |
| Hydra oligactis | HOLI00001.G52346 | WP_110973400.1 | DNA-directed RNA polymerase subunit beta [Pseudomonas huaxiensis] | B0KK60 DNA-directed RNA polymerase subunit beta OS=Pseudomonas puti | JBrowse |
| Hydra oligactis | HOLI00002.G21995 | MBI3521351.1 | DNA-directed RNA polymerase subunit beta [Bacteroidota bacterium] | A6GYU0 DNA-directed RNA polymerase subunit beta OS=Flavobacterium p | JBrowse |
| Hydra oligactis | HOLI00002.G21996 | HBB50054.1 | hypothetical protein [Barnesiella sp.] | A6LE80 DNA-directed RNA polymerase subunit beta' OS=Parabacteroides | JBrowse |
| Hydra oligactis | HOLI00002.G21997 | MBI3521350.1 | DNA-directed RNA polymerase subunit beta' [Bacteroidota bacterium] | Q64NJ8 DNA-directed RNA polymerase subunit beta' OS=Bacteroides fra | JBrowse |
| Hydra oligactis | HOLI00014.G9368 | WP_105261488.1 | DNA-directed RNA polymerase subunit beta' [Rhodoferax sp. TS-BS-61-7] | Q21SF8 DNA-directed RNA polymerase subunit beta' OS=Albidiferax fer | JBrowse |
| Hydra oligactis | HOLI00014.G9369 | WP_105261489.1 | DNA-directed RNA polymerase subunit beta [Rhodoferax sp. TS-BS-61-7] | A1WCM9 DNA-directed RNA polymerase subunit beta OS=Acidovorax sp. ( | JBrowse |
| Hydra oligactis | HOLI00823.G36002 | WP_094289375.1 | DNA-directed RNA polymerase subunit beta [Acidovorax kalamii] | B9MH47 DNA-directed RNA polymerase subunit beta OS=Acidovorax ebreu | JBrowse |
| Hydra oligactis | HOLI00823.G36003 | MBW8462777.1 | DNA-directed RNA polymerase subunit beta [Acidovorax sp.] | A1TVT0 DNA-directed RNA polymerase subunit beta OS=Paracidovorax ci | JBrowse |
| Hydra oligactis | HOLI00823.G36004 | MBU0892990.1 | DNA-directed RNA polymerase subunit beta' [Gammaproteobacteria bacterium] | A1TVS9 DNA-directed RNA polymerase subunit beta' OS=Paracidovorax c | JBrowse |
| Hydra oligactis | HOLI00823.G36005 | ADQ73747.1 | RNA polymerase beta subunit, partial [uncultured bacterium] | A1TVS9 DNA-directed RNA polymerase subunit beta' OS=Paracidovorax c | JBrowse |
| Hydra oligactis | HOLI00823.G36006 | WP_108618659.1 | DNA-directed RNA polymerase subunit beta' [Acidovorax sp. HMWF029] | A1WK56 DNA-directed RNA polymerase subunit beta' OS=Verminephrobact | JBrowse |
