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Support counts the member genes carrying the term. % of genes is that count over all 35 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR30537 | HTH-TYPE TRANSCRIPTIONAL REGULATOR | 30 / 35 | 85.7% | 93.8% of 32 | ≥80% support |
| Pfam | PF03466 | LysR_substrate — LysR substrate binding domain | 31 / 35 | 88.6% | 96.9% of 32 | ≥80% support |
| Pfam | PF00126 | HTH_1 — Bacterial regulatory helix-turn-helix protein, lysR family | 29 / 35 | 82.9% | 90.6% of 32 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 32 / 35 | 91.4% | 97.0% of 33 | ≥80% support |
| GO | GO:0006351 Biological Process | DNA-templated transcription | 30 / 35 | 85.7% | 90.9% of 33 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 30 / 35 | 85.7% | 90.9% of 33 | ≥80% support |
| GO | GO:0043565 Molecular Function | sequence-specific DNA binding | 30 / 35 | 85.7% | 90.9% of 33 | ≥80% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Hydra oligactis | HOLI00001.G49929 | WP_095153759.1 | LysR substrate-binding domain-containing protein [Pseudomonas sp. Irchel 3E13] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00001.G50193 | SNT23532.1 | transcriptional regulator, LysR family [Pseudomonas japonica] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00001.G50282 | WP_110972570.1 | LysR substrate-binding domain-containing protein [Pseudomonas huaxiensis] | P05050 Alpha-ketoglutarate-dependent dioxygenase AlkB OS=Escherichi | JBrowse |
| Hydra oligactis | HOLI00001.G50350 | WP_042130724.1 | transcriptional regulator GcvA [Pseudomonas japonica] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00001.G50689 | WP_175654017.1 | LysR substrate-binding domain-containing protein [Pseudomonas sp. Marseille-P9899] | P24734 HTH-type transcriptional activator AmpR OS=Pseudomonas aerug | JBrowse |
| Hydra oligactis | HOLI00001.G50934 | WP_095155308.1 | LysR substrate-binding domain-containing protein [Pseudomonas sp. Irchel 3E13] | Q9JPU9 HTH-type transcriptional regulator CrgA OS=Neisseria meningi | JBrowse |
| Hydra oligactis | HOLI00001.G51745 | WP_095154791.1 | MULTISPECIES: LysR substrate-binding domain-containing protein [unclassified Pseudomonas] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00001.G52165 | WP_175651969.1 | LysR substrate-binding domain-containing protein [Pseudomonas sp. Marseille-P9899] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00001.G52725 | WP_075802791.1 | LysR family transcriptional regulator [Pseudomonas putida] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00001.G52728 | WP_262130976.1 | LysR substrate-binding domain-containing protein [Pseudomonas sp. 5P_5.1_Bac1] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00001.G52749 | RWW90786.1 | hypothetical protein BHE74_00036532 [Ensete ventricosum] | Q2RSB2 NAD(P) transhydrogenase subunit alpha part 1 OS=Rhodospirill | JBrowse |
| Hydra oligactis | HOLI00001.G52816 | WP_262130760.1 | LysR family transcriptional regulator [Pseudomonas sp. 5P_5.1_Bac1] | P34818 HTH-type transcriptional regulator TrpI OS=Pseudomonas syrin | JBrowse |
| Hydra oligactis | HOLI00001.G52818 | WP_175652495.1 | LysR family transcriptional regulator [Pseudomonas sp. Marseille-P9899] | Q57083 HTH-type transcriptional regulator PerR OS=Escherichia coli | JBrowse |
| Hydra oligactis | HOLI00001.G53537 | WP_175653265.1 | LysR substrate-binding domain-containing protein [Pseudomonas sp. Marseille-P9899] | P34818 HTH-type transcriptional regulator TrpI OS=Pseudomonas syrin | JBrowse |
| Hydra oligactis | HOLI00014.G9676 | WP_105261834.1 | LysR substrate-binding domain-containing protein [Rhodoferax sp. TS-BS-61-7] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00014.G9873 | WP_236635221.1 | LysR substrate-binding domain-containing protein [Rhodoferax sp. TS-BS-61-7] | – | JBrowse |
| Hydra oligactis | HOLI00150.G1865 | WP_105262420.1 | LysR substrate-binding domain-containing protein [Rhodoferax sp. TS-BS-61-7] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00264.G3423 | WP_095598137.1 | transcriptional regulator GcvA [Pseudomonas sp. PIC25] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00522.G16908 | TXH94418.1 | transcriptional regulator GcvA [Rheinheimera sp.] | P0A9F8 Glycine cleavage system transcriptional activator OS=Escheri | JBrowse |
| Hydra oligactis | HOLI00643.G15845 | WP_094289825.1 | LysR substrate-binding domain-containing protein [Acidovorax kalamii] | P11720 HTH-type transcriptional regulator TrpI OS=Pseudomonas aerug | JBrowse |
