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Support counts the member genes carrying the term. % of genes is that count over all 6,131 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 5534 / 6,131 | 90.3% | 100.0% of 5,537 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 5541 / 6,131 | 90.4% | 99.9% of 5,546 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 5489 / 6,131 | 89.5% | 99.0% of 5,546 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 5411 / 6,131 | 88.3% | 97.6% of 5,546 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 4181 / 6,131 | 68.2% | 75.4% of 5,546 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 4143 / 6,131 | 67.6% | 74.7% of 5,546 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 3711 / 6,131 | 60.5% | 66.9% of 5,546 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_000128-T1 | KAJ7394324.1 | subpallium neuron fate commitment [Desmophyllum pertusum] | Q6R3Q6 Brain-specific homeobox protein homolog OS=Danio rerio OX=79 | JBrowse |
| Lophelia pertusa | OS493_001418-T1 | KAJ7381297.1 | hypothetical protein OS493_001418 [Desmophyllum pertusum] | P26797 Homeobox protein ceh-19 OS=Caenorhabditis elegans OX=6239 GN | JBrowse |
| Lophelia pertusa | OS493_001419-T1 | KAJ7381298.1 | hypothetical protein OS493_001419 [Desmophyllum pertusum] | Q810B3 Brain-specific homeobox protein homolog OS=Mus musculus OX=1 | JBrowse |
| Lophelia pertusa | OS493_001420-T1 | KAJ7381299.1 | hypothetical protein OS493_001420 [Desmophyllum pertusum] | – | JBrowse |
| Lophelia pertusa | OS493_001421-T1 | KAJ7381300.1 | hypothetical protein OS493_001421 [Desmophyllum pertusum] | A6NJ46 Homeobox protein Nkx-6.3 OS=Homo sapiens OX=9606 GN=NKX6-3 P | JBrowse |
| Lophelia pertusa | OS493_001422-T1 | KAJ7381301.1 | rhombomere 2 development [Desmophyllum pertusum] | Q14549 Homeobox protein GBX-1 OS=Homo sapiens OX=9606 GN=GBX1 PE=1 | JBrowse |
| Lophelia pertusa | OS493_001425-T1 | KAJ7381304.1 | hypothetical protein OS493_001425 [Desmophyllum pertusum] | P31533 Homeobox protein engrailed-2b OS=Danio rerio OX=7955 GN=eng2 | JBrowse |
| Lophelia pertusa | OS493_002784-T1 | KAJ7340061.1 | hypothetical protein OS493_002784 [Desmophyllum pertusum] | Q9JLZ9 Ventral anterior homeobox 2 OS=Rattus norvegicus OX=10116 GN | JBrowse |
| Lophelia pertusa | OS493_002788-T1 | KAJ7340065.1 | hypothetical protein OS493_002788 [Desmophyllum pertusum] | P56407 Homeobox protein ceh-9 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Lophelia pertusa | OS493_003374-T1 | KAJ7393715.1 | ESX homeobox 1 [Desmophyllum pertusum] | Q91V10 Visual system homeobox 1 OS=Mus musculus OX=10090 GN=Vsx1 PE | JBrowse |
| Lophelia pertusa | OS493_006765-T1 | KAJ7386751.1 | hypothetical protein OS493_006765 [Desmophyllum pertusum] | A9ZPC9 Homeobox protein engrailed OS=Lymnaea stagnalis OX=6523 GN=E | JBrowse |
| Lophelia pertusa | OS493_011877-T1 | KAJ7336656.1 | homeobox [Desmophyllum pertusum] | Q03358 Homeobox protein MSX-2 OS=Mus musculus OX=10090 GN=Msx2 PE=1 | JBrowse |
| Lophelia pertusa | OS493_012066-T1 | KAJ7392404.1 | hypothetical protein OS493_012066 [Desmophyllum pertusum] | Q804S6 Homeobox protein EMX1 OS=Danio rerio OX=7955 GN=emx1 PE=2 SV | JBrowse |
| Lophelia pertusa | OS493_012118-T1 | KAJ7392454.1 | hypothetical protein OS493_012118 [Desmophyllum pertusum] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Lophelia pertusa | OS493_012120-T1 | KAJ7392456.1 | hypothetical protein OS493_012120 [Desmophyllum pertusum] | – | JBrowse |
| Lophelia pertusa | OS493_016175-T1 | KAJ7391885.1 | Homeobox protein Hox-B1 [Desmophyllum pertusum] | P81192 Homeobox protein Hox-A4 (Fragment) OS=Lineus sanguineus OX=1 | JBrowse |
| Lophelia pertusa | OS493_016178-T1 | KAJ7391887.1 | hypothetical protein OS493_016178 [Desmophyllum pertusum] | P09070 Homeobox protein Hox-B4 OS=Xenopus laevis OX=8355 GN=hoxb4 P | JBrowse |
| Lophelia pertusa | OS493_016184-T1 | KAJ7391888.1 | embryonic organ development [Desmophyllum pertusum] | P81192 Homeobox protein Hox-A4 (Fragment) OS=Lineus sanguineus OX=1 | JBrowse |
| Lophelia pertusa | OS493_016186-T1 | KAJ7391890.1 | Homeobox protein Hox-D3 [Desmophyllum pertusum] | Q9YGT4 Homeobox protein Hox-B6b OS=Danio rerio OX=7955 GN=hoxb6b PE | JBrowse |
| Lophelia pertusa | OS493_016845-T1 | KAJ7360217.1 | Ventral anterior homeobox 1 [Desmophyllum pertusum] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
