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Support counts the member genes carrying the term. % of genes is that count over all 2,856 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00104 | Hormone_recep — Ligand-binding domain of nuclear hormone receptor | 2479 / 2,856 | 86.8% | 96.0% of 2,583 | ≥80% support |
| Pfam | PF00105 | zf-C4 — Zinc finger, C4 type (two domains) | 2307 / 2,856 | 80.8% | 89.3% of 2,583 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 2355 / 2,856 | 82.5% | 91.5% of 2,574 | ≥80% support |
| GO | GO:0008270 Molecular Function | zinc ion binding | 2330 / 2,856 | 81.6% | 90.5% of 2,574 | ≥80% support |
| GO | GO:0004879 Molecular Function | nuclear receptor activity | 2321 / 2,856 | 81.3% | 90.2% of 2,574 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 2307 / 2,856 | 80.8% | 89.6% of 2,574 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 2307 / 2,856 | 80.8% | 89.6% of 2,574 | ≥80% support |
| GO | GO:0043565 Molecular Function | sequence-specific DNA binding | 2307 / 2,856 | 80.8% | 89.6% of 2,574 | ≥80% support |
| PANTHER | PTHR24083 | NUCLEAR HORMONE RECEPTOR | 1684 / 2,856 | 59.0% | 65.4% of 2,575 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 1971 / 2,856 | 69.0% | 76.6% of 2,574 | ≥50% support |
| GO | GO:0030154 Biological Process | cell differentiation | 1694 / 2,856 | 59.3% | 65.8% of 2,574 | ≥50% support |
| GO | GO:0048856 Biological Process | anatomical structure development | 1684 / 2,856 | 59.0% | 65.4% of 2,574 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_000241-T1 | KAJ7394432.1 | Nuclear receptor sub 2 group C member 2 [Desmophyllum pertusum] | Q60632 COUP transcription factor 1 OS=Mus musculus OX=10090 GN=Nr2f | JBrowse |
| Lophelia pertusa | OS493_000996-T1 | KAJ7387659.1 | Nuclear receptor sub 2 group F member 6 [Desmophyllum pertusum] | Q60632 COUP transcription factor 1 OS=Mus musculus OX=10090 GN=Nr2f | JBrowse |
| Lophelia pertusa | OS493_006009-T1 | KAJ7339605.1 | hypothetical protein OS493_006009 [Desmophyllum pertusum] | Q6PH18 Nuclear receptor subfamily 2 group F member 1-B OS=Danio rer | JBrowse |
| Lophelia pertusa | OS493_009622-T1 | KAJ7363467.1 | hypothetical protein OS493_009622 [Desmophyllum pertusum] | Q64104 Nuclear receptor subfamily 2 group E member 1 OS=Mus musculu | JBrowse |
| Lophelia pertusa | OS493_009624-T1 | KAJ7363469.1 | positive regulation of rhodopsin protein expression [Desmophyllum pertusum] | Q9TTF0 Photoreceptor-specific nuclear receptor OS=Bos taurus OX=991 | JBrowse |
| Lophelia pertusa | OS493_009909-T1 | KAJ7337059.1 | Hepatocyte nuclear factor 4-gamma [Desmophyllum pertusum] | P79926 Hepatocyte nuclear factor 4-beta OS=Xenopus laevis OX=8355 G | JBrowse |
| Lophelia pertusa | OS493_009910-T1 | KAJ7337060.1 | Hepatocyte nuclear factor 4-alpha [Desmophyllum pertusum] | Q91766 Hepatocyte nuclear factor 4-alpha OS=Xenopus laevis OX=8355 | JBrowse |
| Lophelia pertusa | OS493_010345-T1 | KAJ7392694.1 | hypothetical protein OS493_010345 [Desmophyllum pertusum] | Q8T5C6 Retinoic acid receptor RXR OS=Biomphalaria glabrata OX=6526 | JBrowse |
| Lophelia pertusa | OS493_010673-T1 | KAJ7386269.1 | hypothetical protein OS493_010673 [Desmophyllum pertusum] | P51128 Retinoic acid receptor RXR-alpha OS=Xenopus laevis OX=8355 G | JBrowse |
| Lophelia pertusa | OS493_016483-T1 | KAJ7385400.1 | COUP transcription factor 1 [Desmophyllum pertusum] | Q60632 COUP transcription factor 1 OS=Mus musculus OX=10090 GN=Nr2f | JBrowse |
| Lophelia pertusa | OS493_019732-T1 | KAJ7372288.1 | hypothetical protein OS493_019732 [Desmophyllum pertusum] | Q9W539 Hormone receptor 4 OS=Drosophila melanogaster OX=7227 GN=Hr4 | JBrowse |
| Lophelia pertusa | OS493_019733-T1 | KAJ7372289.1 | hypothetical protein OS493_019733 [Desmophyllum pertusum] | Q90416 Retinoic acid receptor RXR-gamma-A OS=Danio rerio OX=7955 GN | JBrowse |
| Lophelia pertusa | OS493_020513-T1 | KAJ7372089.1 | Nuclear receptor sub 2 group C member 2 [Desmophyllum pertusum] | Q90733 COUP transcription factor 2 OS=Gallus gallus OX=9031 GN=NR2F | JBrowse |
| Lophelia pertusa | OS493_022463-T1 | KAJ7384350.1 | positive regulation of rhodopsin protein expression [Desmophyllum pertusum] | Q9TTF0 Photoreceptor-specific nuclear receptor OS=Bos taurus OX=991 | JBrowse |
| Lophelia pertusa | OS493_023991-T1 | KAJ7390602.1 | hypothetical protein OS493_023991 [Desmophyllum pertusum] | P70052 Nuclear receptor subfamily 2 group E member 1 OS=Xenopus lae | JBrowse |
| Lophelia pertusa | OS493_023992-T1 | KAJ7390603.1 | positive regulation of rhodopsin protein expression [Desmophyllum pertusum] | Q9TTF0 Photoreceptor-specific nuclear receptor OS=Bos taurus OX=991 | JBrowse |
| Lophelia pertusa | OS493_029310-T1 | KAJ7377411.1 | hypothetical protein OS493_029310 [Desmophyllum pertusum] | Q90415 Retinoic acid receptor RXR-alpha-B OS=Danio rerio OX=7955 GN | JBrowse |
| Lophelia pertusa | OS493_036827-T1 | KAJ7388599.1 | hypothetical protein OS493_036827 [Desmophyllum pertusum] | Q06725 Nuclear receptor subfamily 2 group F member 1-A OS=Danio rer | JBrowse |
