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This orthogroup contains 2,252 genes from 149 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 2,252 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 1928 / 2,252 | 85.6% | 97.9% of 1,970 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 1977 / 2,252 | 87.8% | 99.8% of 1,982 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 1923 / 2,252 | 85.4% | 97.0% of 1,982 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 1851 / 2,252 | 82.2% | 93.4% of 1,982 | ≥80% support |
| PANTHER | PTHR24329 | HOMEOBOX PROTEIN ARISTALESS | 1394 / 2,252 | 61.9% | 71.5% of 1,951 | ≥50% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 1765 / 2,252 | 78.4% | 89.1% of 1,982 | ≥50% support |
| GO | GO:0000977 Molecular Function | RNA polymerase II transcription regulatory region sequence-specific DNA binding | 1404 / 2,252 | 62.3% | 70.8% of 1,982 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_001535-T1 | KAJ7381401.1 | hypothetical protein OS493_001535 [Desmophyllum pertusum] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Lophelia pertusa | OS493_012133-T1 | KAJ7392467.1 | hypothetical protein OS493_012133 [Desmophyllum pertusum] | Q1LVQ7 ALX homeobox protein 1 OS=Danio rerio OX=7955 GN=alx1 PE=2 S | JBrowse |
| Lophelia pertusa | OS493_013219-T1 | KAJ7362128.1 | hypothetical protein OS493_013219 [Desmophyllum pertusum] | P29506 Homeobox protein unc-4 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Lophelia pertusa | OS493_013220-T1 | KAJ7362129.1 | hypothetical protein OS493_013220 [Desmophyllum pertusum] | O08934 Homeobox protein unc-4 homolog OS=Mus musculus OX=10090 GN=U | JBrowse |
| Lophelia pertusa | OS493_014763-T1 | KAJ7334446.1 | hypothetical protein OS493_014763 [Desmophyllum pertusum] | Q4LAL6 Homeobox protein aristaless-like 4 OS=Bos taurus OX=9913 GN= | JBrowse |
| Lophelia pertusa | OS493_016467-T1 | KAJ7385386.1 | hypothetical protein OS493_016467 [Desmophyllum pertusum] | O42567 Retinal homeobox protein Rx-B OS=Xenopus laevis OX=8355 GN=r | JBrowse |
| Lophelia pertusa | OS493_020241-T1 | KAJ7384661.1 | Homeobox protein prophet of Pit-1 [Desmophyllum pertusum] | L8E946 Homeobox protein unc-42 OS=Caenorhabditis elegans OX=6239 GN | JBrowse |
| Lophelia pertusa | OS493_022623-T1 | KAJ7357813.1 | Visual system homeobox 2 [Desmophyllum pertusum] | O42250 Visual system homeobox 1 OS=Danio rerio OX=7955 GN=vsx1 PE=1 | JBrowse |
| Lophelia pertusa | OS493_031853-T1 | KAJ7323378.1 | hypothetical protein OS493_031853 [Desmophyllum pertusum] | O35750 Short stature homeobox protein 2 (Fragment) OS=Rattus norveg | JBrowse |
| Lophelia pertusa | OS493_032706-T1 | KAJ7389238.1 | hypothetical protein OS493_032706 [Desmophyllum pertusum] | P54366 Homeobox protein goosecoid OS=Drosophila melanogaster OX=722 | JBrowse |
| Lophelia pertusa | OS493_034130-T1 | KAJ7321743.1 | hypothetical protein OS493_034130 [Desmophyllum pertusum] | O42115 Aristaless-related homeobox protein OS=Danio rerio OX=7955 G | JBrowse |
| Lophelia pertusa | OS493_035715-T1 | KAJ7351773.1 | Homeobox protein aristaless-like 4 [Desmophyllum pertusum] | O95076 Homeobox protein aristaless-like 3 OS=Homo sapiens OX=9606 G | JBrowse |
| Lophelia pertusa | OS493_039647-T1 | KAJ7388127.1 | hypothetical protein OS493_039647, partial [Desmophyllum pertusum] | – | JBrowse |
