← Back to the gene family browser
This orthogroup contains 1,580 genes from 146 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 1,580 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR45636 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED | 1433 / 1,580 | 90.7% | 98.1% of 1,461 | ≥80% support |
| Pfam | PF00292 | PAX — 'Paired box' domain | 1431 / 1,580 | 90.6% | 97.9% of 1,462 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 1463 / 1,580 | 92.6% | 100.0% of 1,463 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 1456 / 1,580 | 92.2% | 99.5% of 1,463 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 1289 / 1,580 | 81.6% | 88.1% of 1,463 | ≥80% support |
| Pfam | PF00046 | Homeodomain | 1117 / 1,580 | 70.7% | 76.4% of 1,462 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 1015 / 1,580 | 64.2% | 69.4% of 1,463 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 1003 / 1,580 | 63.5% | 68.6% of 1,463 | ≥50% support |
| GO | GO:0048856 Biological Process | anatomical structure development | 986 / 1,580 | 62.4% | 67.4% of 1,463 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_002389-T1 | KAJ7365676.1 | Paired box protein Pax-3 [Desmophyllum pertusum] | Q0IH87 Paired box protein Pax-3-B OS=Xenopus laevis OX=8355 GN=pax3 | JBrowse |
| Lophelia pertusa | OS493_002390-T1 | KAJ7365677.1 | Paired box protein Pax-3 [Desmophyllum pertusum] | Q0IH87 Paired box protein Pax-3-B OS=Xenopus laevis OX=8355 GN=pax3 | JBrowse |
| Lophelia pertusa | OS493_002391-T1 | KAJ7365678.1 | organ morphogenesis [Desmophyllum pertusum] | Q90268 Paired box protein Pax-2a OS=Danio rerio OX=7955 GN=pax2a PE | JBrowse |
| Lophelia pertusa | OS493_002392-T1 | KAJ7365679.1 | Paired box protein Pax-3 [Desmophyllum pertusum] | P23760 Paired box protein Pax-3 OS=Homo sapiens OX=9606 GN=PAX3 PE= | JBrowse |
| Lophelia pertusa | OS493_002393-T1 | KAJ7365680.1 | Paired box protein Pax-3 [Desmophyllum pertusum] | Q645N4 Paired box protein Pax-3-A OS=Xenopus laevis OX=8355 GN=pax3 | JBrowse |
| Lophelia pertusa | OS493_002394-T1 | KAJ7365681.1 | Paired box protein Pax-3 [Desmophyllum pertusum] | P23760 Paired box protein Pax-3 OS=Homo sapiens OX=9606 GN=PAX3 PE= | JBrowse |
| Lophelia pertusa | OS493_002408-T1 | KAJ7365693.1 | Paired box protein Pax-3 [Desmophyllum pertusum] | Q0IH87 Paired box protein Pax-3-B OS=Xenopus laevis OX=8355 GN=pax3 | JBrowse |
| Lophelia pertusa | OS493_002409-T1 | KAJ7365694.1 | Paired box protein Pax-3 [Desmophyllum pertusum] | Q0IH87 Paired box protein Pax-3-B OS=Xenopus laevis OX=8355 GN=pax3 | JBrowse |
| Lophelia pertusa | OS493_002410-T1 | KAJ7365695.1 | Paired box protein Pax-3 [Desmophyllum pertusum] | Q0IH87 Paired box protein Pax-3-B OS=Xenopus laevis OX=8355 GN=pax3 | JBrowse |
| Lophelia pertusa | OS493_002411-T1 | KAJ7365696.1 | Paired box protein Pax-7 [Desmophyllum pertusum] | P47239 Paired box protein Pax-7 OS=Mus musculus OX=10090 GN=Pax7 PE | JBrowse |
| Lophelia pertusa | OS493_012428-T1 | KAJ7386087.1 | Paired box protein Pax-6 [Desmophyllum pertusum] | – | JBrowse |
| Lophelia pertusa | OS493_012429-T1 | KAJ7386088.1 | Paired box protein Pax-6 [Desmophyllum pertusum] | P26630 Paired box protein Pax-6 OS=Danio rerio OX=7955 GN=pax6a PE= | JBrowse |
| Lophelia pertusa | OS493_017483-T1 | KAJ7385114.1 | hypothetical protein OS493_017483 [Desmophyllum pertusum] | P47238 Paired box protein Pax-6 OS=Coturnix japonica OX=93934 GN=PA | JBrowse |
| Lophelia pertusa | OS493_025380-T1 | KAJ7371480.1 | hypothetical protein OS493_025380 [Desmophyllum pertusum] | Q90268 Paired box protein Pax-2a OS=Danio rerio OX=7955 GN=pax2a PE | JBrowse |
