← Back to the gene family browser
This orthogroup contains 1,097 genes from 138 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 1,097 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00412 | LIM | 1016 / 1,097 | 92.6% | 99.5% of 1,021 | ≥80% support |
| PANTHER | PTHR45787 | LD11652P | 800 / 1,097 | 72.9% | 78.4% of 1,021 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 661 / 1,097 | 60.3% | 99.9% of 662 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_011369-T1 | KAJ7373760.1 | Protein with similarity to mammalian ELMO [Desmophyllum pertusum] | Q3B8H4 Rhombotin-1 OS=Xenopus laevis OX=8355 GN=lmo1 PE=2 SV=1 | JBrowse |
| Lophelia pertusa | OS493_012420-T1 | KAJ7386080.1 | hypothetical protein OS493_012420 [Desmophyllum pertusum] | Q503U0 LIM domain only protein 3 OS=Danio rerio OX=7955 GN=lmo3 PE= | JBrowse |
| Lophelia pertusa | OS493_012421-T1 | KAJ7386081.1 | hypothetical protein OS493_012421 [Desmophyllum pertusum] | Q503U0 LIM domain only protein 3 OS=Danio rerio OX=7955 GN=lmo3 PE= | JBrowse |
| Lophelia pertusa | OS493_014811-T1 | KAJ7334490.1 | hypothetical protein OS493_014811 [Desmophyllum pertusum] | A0JNI8 LIM/homeobox protein Lhx9 OS=Bos taurus OX=9913 GN=LHX9 PE=2 | JBrowse |
| Lophelia pertusa | OS493_024735-T1 | KAJ7378072.1 | spinal cord association neuron differentiation [Desmophyllum pertusum] | Q6DJ06 LIM domain transcription factor LMO4.2 OS=Xenopus tropicalis | JBrowse |
| Lophelia pertusa | OS493_027637-T1 | KAJ7383476.1 | LIM/homeobox protein Lhx4 [Desmophyllum pertusum] | Q969G2 LIM/homeobox protein Lhx4 OS=Homo sapiens OX=9606 GN=LHX4 PE | JBrowse |
| Lophelia pertusa | OS493_027644-T1 | KAJ7383482.1 | spinal cord association neuron differentiation [Desmophyllum pertusum] | Q6DJ06 LIM domain transcription factor LMO4.2 OS=Xenopus tropicalis | JBrowse |
