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This orthogroup contains 442 genes from 146 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 442 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR15092 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 | 359 / 442 | 81.2% | 100.0% of 359 | ≥80% support |
| Pfam | PF04857 | CAF1 | 361 / 442 | 81.7% | 98.6% of 366 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 377 / 442 | 85.3% | 99.5% of 379 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 365 / 442 | 82.6% | 96.3% of 379 | ≥80% support |
| GO | GO:0005737 Cellular Component | cytoplasm | 365 / 442 | 82.6% | 96.3% of 379 | ≥80% support |
| GO | GO:0004535 Molecular Function | poly(A)-specific ribonuclease activity | 360 / 442 | 81.5% | 95.0% of 379 | ≥80% support |
| GO | GO:0000175 Molecular Function | 3'-5'-RNA exonuclease activity | 359 / 442 | 81.2% | 94.7% of 379 | ≥80% support |
| GO | GO:0000289 Biological Process | nuclear-transcribed mRNA poly(A) tail shortening | 354 / 442 | 80.1% | 93.4% of 379 | ≥80% support |
| KEGG | K01148 | PARN, PNLDC1 — Messenger RNA biogenesis | 257 / 442 | 58.1% | 98.5% of 261 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_004281-T1 | KAJ7387300.1 | Poly(A)-specific ribonuclease pnldc1 [Desmophyllum pertusum] | B2RXZ1 Poly(A)-specific ribonuclease PNLDC1 OS=Mus musculus OX=1009 | JBrowse |
| Lophelia pertusa | OS493_004304-T1 | KAJ7387319.1 | Poly(A)-specific ribonuclease pnldc1 [Desmophyllum pertusum] | Q5R6R6 Poly(A)-specific ribonuclease PNLDC1 OS=Pongo abelii OX=9601 | JBrowse |
| Lophelia pertusa | OS493_029854-T1 | KAJ7354848.1 | hypothetical protein OS493_029854 [Desmophyllum pertusum] | Q90ZA1 Poly(A)-specific ribonuclease PARN OS=Xenopus laevis OX=8355 | JBrowse |
