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This orthogroup contains 286 genes from 140 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 286 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11165 | SKP1 | 231 / 286 | 80.8% | 99.6% of 232 | ≥80% support |
| Pfam | PF03931 | Skp1_POZ — Skp1 family, tetramerisation domain | 231 / 286 | 80.8% | 97.5% of 237 | ≥80% support |
| GO | GO:0006511 Biological Process | ubiquitin-dependent protein catabolic process | 237 / 286 | 82.9% | 100.0% of 237 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 232 / 286 | 81.1% | 97.9% of 237 | ≥80% support |
| GO | GO:0005737 Cellular Component | cytoplasm | 231 / 286 | 80.8% | 97.5% of 237 | ≥80% support |
| GO | GO:0031146 Biological Process | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 231 / 286 | 80.8% | 97.5% of 237 | ≥80% support |
| GO | GO:0097602 Molecular Function | cullin family protein binding | 231 / 286 | 80.8% | 97.5% of 237 | ≥80% support |
| Pfam | PF01466 | Skp1 | 226 / 286 | 79.0% | 95.4% of 237 | ≥50% support |
| KEGG | K03094 | SKP1, CBF3D — Chromosome and associated proteins | 212 / 286 | 74.1% | 100.0% of 212 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_032056-T1 | XP_020611660.1 | S-phase kinase-associated protein 1 isoform X1 [Orbicella faveolata] | Q3ZCF3 S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN | JBrowse |
| Lophelia pertusa | OS493_039522-T1 | KAJ7375695.1 | suppressor of kinetochore protein mutant, partial [Desmophyllum pertusum] | G5ECU1 Skp1-related protein OS=Caenorhabditis elegans OX=6239 GN=sk | JBrowse |
