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This orthogroup contains 280 genes from 141 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 280 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13931 | UBIQUITINATION FACTOR E4 | 238 / 280 | 85.0% | 100.0% of 238 | ≥80% support |
| Pfam | PF10408 | Ufd2P_core — Ubiquitin elongating factor core | 230 / 280 | 82.1% | 98.7% of 233 | ≥80% support |
| GO | GO:0000151 Cellular Component | ubiquitin ligase complex | 238 / 280 | 85.0% | 100.0% of 238 | ≥80% support |
| GO | GO:0000209 Biological Process | protein polyubiquitination | 238 / 280 | 85.0% | 100.0% of 238 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 238 / 280 | 85.0% | 100.0% of 238 | ≥80% support |
| GO | GO:0005737 Cellular Component | cytoplasm | 238 / 280 | 85.0% | 100.0% of 238 | ≥80% support |
| GO | GO:0030433 Biological Process | obsolete ubiquitin-dependent ERAD pathway | 238 / 280 | 85.0% | 100.0% of 238 | ≥80% support |
| GO | GO:0034450 Molecular Function | ubiquitin-ubiquitin ligase activity | 238 / 280 | 85.0% | 100.0% of 238 | ≥80% support |
| GO | GO:0036503 Biological Process | ERAD pathway | 238 / 280 | 85.0% | 100.0% of 238 | ≥80% support |
| GO | GO:0016567 Biological Process | protein ubiquitination | 233 / 280 | 83.2% | 97.9% of 238 | ≥80% support |
| GO | GO:0006511 Biological Process | ubiquitin-dependent protein catabolic process | 230 / 280 | 82.1% | 96.6% of 238 | ≥80% support |
| Pfam | PF04564 | U-box | 188 / 280 | 67.1% | 80.7% of 233 | ≥50% support |
| GO | GO:0004842 Molecular Function | ubiquitin-protein transferase activity | 188 / 280 | 67.1% | 79.0% of 238 | ≥50% support |
| KEGG | K10597 | UBE4B, UFD2 — Ubiquitin system | 167 / 280 | 59.6% | 98.2% of 170 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_000462-T1 | KAJ7394642.1 | Ubiquitin conjugation factor E4 B [Desmophyllum pertusum] | Q9ES00 Ubiquitin conjugation factor E4 B OS=Mus musculus OX=10090 G | JBrowse |
