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This orthogroup contains 273 genes from 130 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 273 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12433 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25 | 198 / 273 | 72.5% | 99.0% of 200 | ≥50% support |
| Pfam | PF11232 | Med25 — Mediator complex subunit 25 PTOV activation and synapsin 2 | 187 / 273 | 68.5% | 88.6% of 211 | ≥50% support |
| Pfam | PF11265 | Med25_VWA — Mediator complex subunit 25 von Willebrand factor type A | 179 / 273 | 65.6% | 84.8% of 211 | ≥50% support |
| GO | GO:0005667 Cellular Component | transcription regulator complex | 198 / 273 | 72.5% | 99.0% of 200 | ≥50% support |
| GO | GO:0016592 Cellular Component | mediator complex | 198 / 273 | 72.5% | 99.0% of 200 | ≥50% support |
| GO | GO:0045944 Biological Process | positive regulation of transcription by RNA polymerase II | 198 / 273 | 72.5% | 99.0% of 200 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_036688-T1 | KAJ7388614.1 | Mediator of RNA polymerase II transcription subunit 25 [Desmophyllum pertusum] | A4IHD9 Mediator of RNA polymerase II transcription subunit 25 OS=Xe | JBrowse |
| Lophelia pertusa | OS493_036689-T1 | KAJ7388615.1 | Mediator of RNA polymerase II transcription subunit 25 [Desmophyllum pertusum] | Q6GP15 Mediator of RNA polymerase II transcription subunit 25 OS=Xe | JBrowse |
| Lophelia pertusa | OS493_036690-T1 | KAJ7388616.1 | hypothetical protein OS493_036690 [Desmophyllum pertusum] | – | JBrowse |
