← Back to the gene family browser
This orthogroup contains 253 genes from 144 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 253 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11246 | PRE-MRNA SPLICING FACTOR | 206 / 253 | 81.4% | 99.0% of 208 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 217 / 253 | 85.8% | 97.8% of 222 | ≥80% support |
| GO | GO:0005515 Molecular Function | protein binding | 207 / 253 | 81.8% | 93.2% of 222 | ≥80% support |
| GO | GO:0000244 Biological Process | spliceosomal tri-snRNP complex assembly | 206 / 253 | 81.4% | 92.8% of 222 | ≥80% support |
| GO | GO:0046540 Cellular Component | U4/U6 x U5 tri-snRNP complex | 206 / 253 | 81.4% | 92.8% of 222 | ≥80% support |
| GO | GO:0071013 Cellular Component | catalytic step 2 spliceosome | 206 / 253 | 81.4% | 92.8% of 222 | ≥80% support |
| Pfam | PF06424 | PRP1_N — PRP1 splicing factor, N-terminal | 185 / 253 | 73.1% | 88.9% of 208 | ≥50% support |
| Pfam | PF13432 | TPR_16 — Tetratricopeptide repeat | 135 / 253 | 53.4% | 64.9% of 208 | ≥50% support |
| GO | GO:0006396 Biological Process | RNA processing | 200 / 253 | 79.1% | 90.1% of 222 | ≥50% support |
| KEGG | K12855 | PRPF6, PRP6 — Spliceosome | 177 / 253 | 70.0% | 98.3% of 180 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_032444-T1 | KAJ7389286.1 | Pre-mRNA-processing factor 6 [Desmophyllum pertusum] | Q91YR7 Pre-mRNA-processing factor 6 OS=Mus musculus OX=10090 GN=Prp | JBrowse |
