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This orthogroup contains 247 genes from 144 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 247 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR19846 | WD40 REPEAT PROTEIN | 196 / 247 | 79.4% | 98.5% of 199 | ≥50% support |
| Pfam | PF00400 | WD40 — WD domain, G-beta repeat | 190 / 247 | 76.9% | 96.5% of 197 | ≥50% support |
| Pfam | PF08799 | PRP4 | 157 / 247 | 63.6% | 79.7% of 197 | ≥50% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 196 / 247 | 79.4% | 98.5% of 199 | ≥50% support |
| GO | GO:0017070 Molecular Function | U6 snRNA binding | 196 / 247 | 79.4% | 98.5% of 199 | ≥50% support |
| GO | GO:0030621 Molecular Function | U4 snRNA binding | 196 / 247 | 79.4% | 98.5% of 199 | ≥50% support |
| GO | GO:0046540 Cellular Component | U4/U6 x U5 tri-snRNP complex | 196 / 247 | 79.4% | 98.5% of 199 | ≥50% support |
| GO | GO:0005515 Molecular Function | protein binding | 190 / 247 | 76.9% | 95.5% of 199 | ≥50% support |
| KEGG | K12662 | PRPF4, PRP4 — Spliceosome | 166 / 247 | 67.2% | 98.2% of 169 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_014758-T1 | KAJ7334443.1 | U4/U6 small nuclear ribonucleoprotein Prp4 [Desmophyllum pertusum] | – | JBrowse |
| Lophelia pertusa | OS493_014759-T1 | KAJ7334444.1 | U4/U6 small nuclear ribonucleoprotein Prp4 [Desmophyllum pertusum] | Q5NVD0 U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii O | JBrowse |
