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This orthogroup contains 242 genes from 141 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 242 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR15316 | SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED | 215 / 242 | 88.8% | 100.0% of 215 | ≥80% support |
| GO | GO:0000381 Biological Process | regulation of alternative mRNA splicing, via spliceosome | 215 / 242 | 88.8% | 100.0% of 215 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 215 / 242 | 88.8% | 100.0% of 215 | ≥80% support |
| GO | GO:0005686 Cellular Component | U2 snRNP | 215 / 242 | 88.8% | 100.0% of 215 | ≥80% support |
| GO | GO:0045292 Biological Process | mRNA cis splicing, via spliceosome | 215 / 242 | 88.8% | 100.0% of 215 | ≥80% support |
| GO | GO:0071004 Cellular Component | U2-type prespliceosome | 215 / 242 | 88.8% | 100.0% of 215 | ≥80% support |
| GO | GO:0071013 Cellular Component | catalytic step 2 spliceosome | 215 / 242 | 88.8% | 100.0% of 215 | ≥80% support |
| Pfam | PF12230 | PRP21_like_P — Pre-mRNA splicing factor PRP21 like protein | 192 / 242 | 79.3% | 89.7% of 214 | ≥50% support |
| Pfam | PF01805 | Surp | 187 / 242 | 77.3% | 87.4% of 214 | ≥50% support |
| Pfam | PF00240 | ubiquitin | 166 / 242 | 68.6% | 77.6% of 214 | ≥50% support |
| GO | GO:0006396 Biological Process | RNA processing | 187 / 242 | 77.3% | 87.0% of 215 | ≥50% support |
| GO | GO:0005515 Molecular Function | protein binding | 173 / 242 | 71.5% | 80.5% of 215 | ≥50% support |
| KEGG | K12825 | SF3A1, SAP114 — Spliceosome | 162 / 242 | 66.9% | 97.6% of 166 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_007089-T1 | KAJ7380719.1 | splicing factor 3a, subunit 1 [Desmophyllum pertusum] | A2VDN6 Splicing factor 3A subunit 1 OS=Bos taurus OX=9913 GN=SF3A1 | JBrowse |
| Lophelia pertusa | OS493_007090-T1 | KAJ7380720.1 | splicing factor 3a, subunit 1 [Desmophyllum pertusum] | Q8K4Z5 Splicing factor 3A subunit 1 OS=Mus musculus OX=10090 GN=Sf3 | JBrowse |
