← Back to the gene family browser
This orthogroup contains 227 genes from 132 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 227 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12695 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 | 202 / 227 | 89.0% | 100.0% of 202 | ≥80% support |
| Pfam | PF04056 | Ssl1 | 192 / 227 | 84.6% | 97.0% of 198 | ≥80% support |
| GO | GO:0005675 Cellular Component | transcription factor TFIIH holo complex | 202 / 227 | 89.0% | 100.0% of 202 | ≥80% support |
| GO | GO:0006289 Biological Process | nucleotide-excision repair | 202 / 227 | 89.0% | 100.0% of 202 | ≥80% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 202 / 227 | 89.0% | 100.0% of 202 | ≥80% support |
| Pfam | PF07975 | C1_4 — TFIIH C1-like domain | 152 / 227 | 67.0% | 76.8% of 198 | ≥50% support |
| GO | GO:0000439 Cellular Component | transcription factor TFIIH core complex | 179 / 227 | 78.9% | 88.6% of 202 | ≥50% support |
| GO | GO:0006351 Biological Process | DNA-templated transcription | 179 / 227 | 78.9% | 88.6% of 202 | ≥50% support |
| GO | GO:0006281 Biological Process | DNA repair | 155 / 227 | 68.3% | 76.7% of 202 | ≥50% support |
| GO | GO:0008270 Molecular Function | zinc ion binding | 155 / 227 | 68.3% | 76.7% of 202 | ≥50% support |
| KEGG | K03142 | TFIIH2, GTF2H2, SSL1 — DNA repair and recombination proteins | 164 / 227 | 72.3% | 98.8% of 166 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_027952-T1 | KAJ7326102.1 | General transcription factor IIH subunit 2 [Desmophyllum pertusum] | Q2TBV5 General transcription factor IIH subunit 2 OS=Bos taurus OX= | JBrowse |
