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This orthogroup contains 218 genes from 138 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 218 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR13288 | SPLICING FACTOR 45 SPF45 | 181 / 218 | 83.0% | 98.9% of 183 | ≥80% support |
| GO | GO:0071011 Cellular Component | precatalytic spliceosome | 182 / 218 | 83.5% | 99.5% of 183 | ≥80% support |
| GO | GO:0000398 Biological Process | mRNA splicing, via spliceosome | 181 / 218 | 83.0% | 98.9% of 183 | ≥80% support |
| GO | GO:0045292 Biological Process | mRNA cis splicing, via spliceosome | 181 / 218 | 83.0% | 98.9% of 183 | ≥80% support |
| GO | GO:0003676 Molecular Function | nucleic acid binding | 180 / 218 | 82.6% | 98.4% of 183 | ≥80% support |
| GO | GO:0000380 Biological Process | alternative mRNA splicing, via spliceosome | 176 / 218 | 80.7% | 96.2% of 183 | ≥80% support |
| Pfam | PF01585 | G-patch | 174 / 218 | 79.8% | 97.2% of 179 | ≥50% support |
| Pfam | PF00076 | RRM_1 — RNA recognition motif | 140 / 218 | 64.2% | 78.2% of 179 | ≥50% support |
| GO | GO:0003723 Molecular Function | RNA binding | 159 / 218 | 72.9% | 86.9% of 183 | ≥50% support |
| KEGG | K12840 | RBM17, SPF45 — Spliceosome | 159 / 218 | 72.9% | 98.8% of 161 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Lophelia pertusa | OS493_034004-T1 | KAJ7376548.1 | Splicing factor 45 [Desmophyllum pertusum] | Q96I25 Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV= | JBrowse |
| Lophelia pertusa | OS493_039654-T1 | KAJ7375676.1 | Splicing factor 45 [Desmophyllum pertusum] | Q96I25 Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV= | JBrowse |
